Mission Bay Hotels, San Francisco

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Our top choices for Mission Bay hotels

LUMA Hotel San Francisco

LUMA Hotel San Francisco
4.0 star property
Mission Bay
9.6 out of 10, Exceptional, (2,482 reviews)
"Very nice and clean hotel!"
United States
Ulises
The price is NZ$454
includes taxes & fees
29 May - 30 May
LUMA Hotel San Francisco

The Evergreen

The Evergreen
2.0 star property
20.3 km from Mission Bay
9.2 out of 10, Wonderful, (530 reviews)
"Nice property. "
United States
Chris
The price is NZ$246
includes taxes & fees
10 May - 11 May
The Evergreen

Hotel Riu Plaza Fisherman's Wharf

Hotel Riu Plaza Fisherman's Wharf
4.0 star property
Fisherman's Wharf, 4.5 km from Mission Bay
9.0 out of 10, Wonderful, (7,469 reviews)
"Great family stay! "
United States
Brian
The price is NZ$357
includes taxes & fees
25 May - 26 May
Hotel Riu Plaza Fisherman's Wharf

Marin Lodge

Marin Lodge
2.0 star property
26.6 km from Mission Bay
9.6 out of 10, Exceptional, (1,003 reviews)
"Great location and fantastic staff. Room was great. Would stay there again. "
United States
Shannon
The price is NZ$205
includes taxes & fees
10 May - 11 May
Marin Lodge

Hilton San Francisco Airport Bayfront

Hilton San Francisco Airport Bayfront
4.0 star property
20.5 km from Mission Bay
8.6 out of 10, Excellent, (2,988 reviews)
"Very nice stay"
United States
Johnathon
The price is NZ$243
includes taxes & fees
5 June - 6 June
Hilton San Francisco Airport Bayfront

Marina Village Inn

Marina Village Inn
2.0 star property
11.2 km from Mission Bay
7.4 out of 10, Good, (1,004 reviews)
"Love this spot. Third time staying here. Parking is convenient, staff is friendly & accommodating, rooms are simple cozy & do just the trick for a well rested night! Very much recommend staying here, and the view is so charming! Truly a hidden gem to stay!!!"
United States
Karly N
The price is NZ$187
includes taxes & fees
10 May - 11 May
Marina Village Inn

Grand Bay Hotel San Francisco

Grand Bay Hotel San Francisco
4.0 star property
29.8 km from Mission Bay
8.4 out of 10, Very good, (1,002 reviews)
"Clean room excellent staff really enjoyed my stay"
United States
Ana Patricia Rivera
The price is NZ$259
includes taxes & fees
22 May - 23 May
Grand Bay Hotel San Francisco

The Dylan at SFO

The Dylan at SFO
3.0 star property
19.2 km from Mission Bay
9.2 out of 10, Wonderful, (1,870 reviews)
"Great staff and very clean rooms "
United States
Laura
The price is NZ$227
includes taxes & fees
9 May - 10 May
The Dylan at SFO

The Marina Inn on San Francisco Bay

The Marina Inn on San Francisco Bay
3.5 star property
19.6 km from Mission Bay
8.6 out of 10, Excellent, (2,434 reviews)
"Overall stay was good "
United States
Ganesh
The price is NZ$184
includes taxes & fees
9 May - 10 May
The Marina Inn on San Francisco Bay

Aloft San Francisco Airport

Aloft San Francisco Airport
3.0 star property
18.7 km from Mission Bay
9.0 out of 10, Wonderful, (2,265 reviews)
"Clean, modern, close to airport, nice rooms."
Canada
Katherine
The price is NZ$246
includes taxes & fees
31 May - 1 June
Aloft San Francisco Airport

Hyatt Place San Francisco Downtown

Hyatt Place San Francisco Downtown
3.0 star property
0.9 km from Mission Bay
9.4 out of 10, Exceptional, (2,153 reviews)
"Clean great location great breakfast Beds comfy"
United States
Zorintha Ann
The price is NZ$395
includes taxes & fees
29 May - 30 May
Hyatt Place San Francisco Downtown

DoubleTree by Hilton Hotel Berkeley Marina

DoubleTree by Hilton Hotel Berkeley Marina
4.0 star property
12.8 km from Mission Bay
8.2 out of 10, Very good, (4,576 reviews)
"Great price for a clean comfortable stay in Berkeley"
United States
Mary
The price is NZ$265
includes taxes & fees
24 May - 25 May
DoubleTree by Hilton Hotel Berkeley Marina

Hotel Caza Fisherman's Wharf

Hotel Caza Fisherman's Wharf
4.0 star property
Fisherman's Wharf, 4.6 km from Mission Bay
9.0 out of 10, Wonderful, (3,819 reviews)
"Great comfortable stay and friendly/helpful staff."
United States
Liliana
The price is NZ$365
includes taxes & fees
25 May - 26 May
Hotel Caza Fisherman's Wharf

Hyatt Regency San Francisco Airport

Hyatt Regency San Francisco Airport
4.0 star property
19.8 km from Mission Bay
9.0 out of 10, Wonderful, (1,358 reviews)
"Great location right off the freeway."
United States
Michelle
The price is NZ$306
includes taxes & fees
30 May - 31 May
Hyatt Regency San Francisco Airport

Holiday Inn Express Hotel & Suites Oakland-Airport by IHG

Holiday Inn Express Hotel & Suites Oakland-Airport by IHG
2.5 star property
17.7 km from Mission Bay
8.8 out of 10, Excellent, (1,005 reviews)
"The friendliness of the staff and the ease of the airport shuttle were two highlights for me. The breakfast provided good too!"
United States
Mary
The price is NZ$250
includes taxes & fees
24 May - 25 May
Holiday Inn Express Hotel & Suites Oakland-Airport by IHG

Cow Hollow Inn & Suites

Cow Hollow Inn & Suites
3.5 star property
Marina District, 5.2 km from Mission Bay
9.2 out of 10, Wonderful, (1,617 reviews)
"Had a lovely stay with family here."
United Kingdom
Karen
The price is NZ$249
includes taxes & fees
31 May - 1 June
Cow Hollow Inn & Suites

Hotel Zephyr San Francisco

Hotel Zephyr San Francisco
4.0 star property
Fisherman's Wharf, 4.5 km from Mission Bay
8.6 out of 10, Excellent, (2,553 reviews)
"We had a great stay with clean rooms and friendly staff"
United States
Kara
The price is NZ$337
includes taxes & fees
25 May - 26 May
Hotel Zephyr San Francisco

Hotel Aura SFO

Hotel Aura SFO
3.0 star property
17.1 km from Mission Bay
9.0 out of 10, Wonderful, (2,633 reviews)
"Breakfast was fresh and the staff is great also they have parking for the guest "
United States
Nathaniel
The price is NZ$208
includes taxes & fees
10 May - 11 May
Hotel Aura SFO

Inn at Rockaway San Francisco Pacifica

Inn at Rockaway San Francisco Pacifica
2.5 star property
20.2 km from Mission Bay
8.2 out of 10, Very good, (1,021 reviews)
"Staff was wonderful, beautiful location. "
United States
Cathy
The price is NZ$222
includes taxes & fees
12 May - 13 May
Inn at Rockaway San Francisco Pacifica

Crowne Plaza San Francisco Airport by IHG

Crowne Plaza San Francisco Airport by IHG
3.5 star property
20.3 km from Mission Bay
7.8 out of 10, Good, (2,721 reviews)
"Friendly staff, airport shuttle service a big plus."
United States
MARISSA
The price is NZ$218
includes taxes & fees
10 May - 11 May
Crowne Plaza San Francisco Airport by IHG
Lowest nightly price found within the past 24 hours based on a 1 night stay for 2 adults. Prices and availability subject to change. Additional terms may apply.

Our guide on where to stay in Mission Bay

Find the best Mission Bay areas for the activities you enjoy most.

Union Square

Fashion puts its best foot forward in one of America’s largest shopping plazas.

Fisherman's Wharf

Taste some of the city’s freshest sea food and catch some fabulous views in this waterfront neighbourhood dating back to the time of the gold rush.

Downtown San Francisco

Known for its fascinating museums, popular shops and acclaimed art galleries, there's plenty to explore in Downtown San Francisco. Top attractions like Oracle Park and San Francisco Bay are major draws. Catch the metro at Market St & 5th St Stop or Market St & Taylor St Stop to see more of the city.

South of Market

From baseball games to top-notch art exhibits, find endless entertainment in one of San Francisco’s fastest-growing neighborhoods.

Nob Hill

Examine architecturally significant buildings, visit the Cable Car Museum and enjoy magnificent views of greater San Francisco in this affluent district.

Top Mission Bay Hotel Reviews

Frequently asked questions

What is Mission Bay like?
Travellers will be sure to enjoy their time in San Francisco's Mission Bay neighbourhood. Make sure that you visit Chase Center and Lefty O'Doul Bridge as part of your Mission Bay travel plans.
Where is the best place to stay in Mission Bay?
Based on our traveller data, LUMA Hotel San Francisco is one of the top choices for your stay in Mission Bay. This hotel is a short 5-minute walk from Oracle Park, and it offers a restaurant and a fitness centre.
How many hotels will I be able to find in Mission Bay?
When you want to put your feet up after a day of exploring the sights in San Francisco, you can choose from 14 Expedia hotels and other accommodation options in Mission Bay.
If I need to cancel my hotel reservation in Mission Bay, will I receive a refund?
Yes! The majority of hotel bookings are fully refundable provided that you cancel prior to the accommodation's cancellation deadline, which often is within 24-48 hours of your check-in date. If you have a non-refundable reservation, it might still be possible to cancel it and be given a refund within 24 hours of booking. Put your dates in and click on "Search", then you can filter by "fully refundable" to review the best deals available in Mission Bay.
What are the top things to see and do in Mission Bay?
Chase Center, Lefty O'Doul Bridge and Lucky Strike San Francisco are just a few attractions to check out in Mission Bay. While you're out sightseeing, Oracle Park and Pier 39 are a couple of additional sights to visit in San Francisco.
How can I get around Mission Bay and the greater San Francisco area?
For a quick way to explore the city, catch a ride on metro transit at UCSF/Chase Center Stop, Mission Rock Station or UCSF Mission Bay Stop. To venture out of town, take a train from San Francisco Station.

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