Top Hotels Near Mission Bay in San Diego from NZ$109

  • Change your mind

    Book hotels with free cancellation
  • Treat yourself

    Sign in to save 10% or more on thousands of hotels
  • Be picky

    Search almost a million properties worldwide

Check prices for these dates

This weekend
Next weekend

Filter by

Guest rating
Guest rating
Star rating

Our top choices for Mission Bay hotels

ITH Mission Beach Backpacker Hostel

ITH Mission Beach Backpacker Hostel
2.0 star property
Central Mission Beach, 2.4 km from Mission Bay
9.4 out of 10, Exceptional, (209 reviews)
"I’ve stayed at ITH Mission Beach a few times and every time I enjoy my stay. They offer many activities to do, the staff is very friendly and you can’t beat the location. One of the better hostels in San Diego. I highly recommend . "
United States
Kimberley
The price is NZ$186
includes taxes & fees
5 May - 6 May
ITH Mission Beach Backpacker Hostel

The Dana on Mission Bay

The Dana on Mission Bay
3.5 star property
Mission Bay, 1.6 km from Mission Bay
9.0 out of 10, Wonderful, (4,312 reviews)
"Beautiful property right in Mission Bay. Nice clean rooms, professional staff and great ammenities. Close to Seaworld, airport, and several beaches."
United States
Matthew
The price is NZ$387
includes taxes & fees
10 May - 11 May
The Dana on Mission Bay

Paradise Point Resort & Spa

Paradise Point Resort & Spa
4.0 star property
Mission Bay, 1.3 km from Mission Bay
8.8 out of 10, Excellent, (2,558 reviews)
"Everything was really nice and clean. Staff was very attentive and helpful and a great place right on the water in mission bay. "
United States
Stephen
The price is NZ$495
includes taxes & fees
10 May - 11 May
Paradise Point Resort & Spa

The Wayfarer San Diego

The Wayfarer San Diego
4.0 star property
Mission Beach, 3 km from Mission Bay
9.4 out of 10, Exceptional, (1,767 reviews)
"Staff was incredibly friendly and rooms very clean. Great location right next to the beach."
United States
Chris
The price is NZ$466
includes taxes & fees
6 May - 7 May
The Wayfarer San Diego

Holiday Inn Express San Diego - SeaWorld Area by IHG

Holiday Inn Express San Diego - SeaWorld Area by IHG
2.5 star property
2.5 km from Mission Bay
9.0 out of 10, Wonderful, (1,004 reviews)
"Great location for Sea World theme park. . Friendly and courteous staff. Parking was easily accessible. Breakfast was great. "
United States
Maritza
The price is NZ$266
includes taxes & fees
10 May - 11 May
Holiday Inn Express San Diego - SeaWorld Area by IHG

Hampton Inn & Suites by Hilton San Diego SeaWorld Near Old Town

Hampton Inn & Suites by Hilton San Diego SeaWorld Near Old Town
3.0 star property
3.2 km from Mission Bay
9.2 out of 10, Wonderful, (886 reviews)
"Great place to stay, nice room Highly recommended !!"
United States
Wilfredo
The price is NZ$285
includes taxes & fees
3 May - 4 May
Hampton Inn & Suites by Hilton San Diego SeaWorld Near Old Town

San Diego Mission Bay Resort

San Diego Mission Bay Resort
4.0 star property
Mission Bay, 1.5 km from Mission Bay
8.4 out of 10, Very good, (1,430 reviews)
"We had a great stay and very pleasant vacation at Mission Bay Resort. Confortable and nice."
United States
Marta
The price is NZ$477
includes taxes & fees
10 May - 11 May
San Diego Mission Bay Resort

Bahia Resort Hotel

Bahia Resort Hotel
3.5 star property
Central Mission Beach, 2 km from Mission Bay
8.6 out of 10, Excellent, (2,037 reviews)
"Great location, private beach, great food at the restaurants. Short walk to Mission Beach which is awesome. Outdoor Pool and hot tub is a nice feature to have. Overall Great place to stay"
Canada
Bond
The price is NZ$443
includes taxes & fees
20 May - 21 May
Bahia Resort Hotel

Hyatt Regency Mission Bay Spa and Marina

Hyatt Regency Mission Bay Spa and Marina
4.0 star property
Mission Bay, 1.9 km from Mission Bay
8.4 out of 10, Very good, (1,627 reviews)
"Great hotel with great staff and amenities. Great location for a San Diego get away."
United States
Donald
The price is NZ$438
includes taxes & fees
10 May - 11 May
Hyatt Regency Mission Bay Spa and Marina

Fairfield Inn & Suites by Marriott San Diego Pacific Beach

Fairfield Inn & Suites by Marriott San Diego Pacific Beach
3.0 star property
Pacific Beach, 2.9 km from Mission Bay
8.8 out of 10, Excellent, (882 reviews)
"Great property right off the freeway. Close to playground and mission bay. A few minute drive to plenty of food option in pacific beach Traffic can be noisy since it’s right off the freeway"
United States
Christopher
The price is NZ$265
includes taxes & fees
25 May - 26 May
Fairfield Inn & Suites by Marriott San Diego Pacific Beach

Catamaran Resort and Spa

Catamaran Resort and Spa
4.0 star property
Mission Beach, 2.9 km from Mission Bay
8.6 out of 10, Excellent, (1,236 reviews)
"Very nice location, great view of Mission Bay. Easy walking distance to off site restaurants and pacific ocean beach. Hotel is very dated, room service fine, however, we stayed 10 days and never experienced room cleaning. "
United States
John
The price is NZ$502
includes taxes & fees
10 May - 11 May
Catamaran Resort and Spa

Comfort Inn Sea World Area

Comfort Inn Sea World Area
3.5 star property
3.2 km from Mission Bay
8.6 out of 10, Excellent, (3,621 reviews)
"Very convenient location, friendly staff, breakfast was good! great gym too! we were really close to Seaworld."
United States
Alexander
The price is NZ$210
includes taxes & fees
12 May - 13 May
Comfort Inn Sea World Area

Best Western San Diego Pacific Beach/Mission Bay

Best Western San Diego Pacific Beach/Mission Bay
2.5 star property
Bay Park, 2.5 km from Mission Bay
8.2 out of 10, Very good, (375 reviews)
"Everything is freshly renewed, smells great , breakfast included & close to alot of things! Mission Bay is across the bridge with lots of play area for the littles! Loved it "
United States
Blanca
The price is NZ$170
includes taxes & fees
25 May - 26 May
Best Western San Diego Pacific Beach/Mission Bay

GreenTree Inn San Diego Mission Bay

GreenTree Inn San Diego Mission Bay
2.5 star property
Pacific Beach, 3 km from Mission Bay
8.0 out of 10, Very good, (2,059 reviews)
"Location is great. About 8-12 min drive yo places like La Jolla, Old Town, Little Italy, SD zoo. Double bed rooms are a bit compact, but we didn’t mind considering we spent most of our time exploring. "
United States
Paola
The price is NZ$188
includes taxes & fees
26 May - 27 May
GreenTree Inn San Diego Mission Bay

Surfer Beach Hotel

Surfer Beach Hotel
3.0 star property
Pacific Beach, 3 km from Mission Bay
8.2 out of 10, Very good, (1,267 reviews)
"The location and staff makes this hotel stand out! Right off the boardwalk, walkable to downtown Pacific Beach night life and food or go the other direction for endless beach access. It is an older hotel in structure and room style, with very basic amenities, but clean and extremely sound proof! We would definitely stay again. Thank you Surfer Beach for a wonderful vacation!!"
United States
Rachel
The price is NZ$436
includes taxes & fees
11 May - 12 May
Surfer Beach Hotel

SureStay Hotel by Best Western San Diego Pacific Beach

SureStay Hotel by Best Western San Diego Pacific Beach
2.5 star property
Pacific Beach, 3 km from Mission Bay
8.0 out of 10, Very good, (1,570 reviews)
"Breakfast was great, staff were great, definitely my favorite budget hotel! The location is excellent, too, just a few minutes from the boardwalk, and a 3 minute drive to pacific park."
United States
Peter
The price is NZ$191
includes taxes & fees
5 May - 6 May
SureStay Hotel by Best Western San Diego Pacific Beach

ITH Beach Bungalow Surf Hostel

ITH Beach Bungalow Surf Hostel
2.0 star property
Pacific Beach, 3.2 km from Mission Bay
8.0 out of 10, Very good, (258 reviews)
"What an amazing bunch of people running the most comfortable place in all of San Diego. "
United States
Jerry
The price is NZ$109
includes taxes & fees
12 May - 13 May
ITH Beach Bungalow Surf Hostel

Heritage Inn San Diego

Heritage Inn San Diego
2.0 star property
2.5 km from Mission Bay
7.4 out of 10, Good, (1,416 reviews)
"Clean room, decent parking, and close to the beach "
United States
Curtis
The price is NZ$137
includes taxes & fees
4 May - 5 May
Heritage Inn San Diego

Wyndham Garden San Diego Near SeaWorld

Wyndham Garden San Diego Near SeaWorld
3.0 star property
2.8 km from Mission Bay
7.4 out of 10, Good, (4,210 reviews)
"Over all great stay. Close to the arena which is the best perk! Over all clean and safe. On site security. Shopping and food near by."
United States
Kevin
The price is NZ$232
includes taxes & fees
4 May - 5 May
Wyndham Garden San Diego Near SeaWorld

E-Z 8 Motel Old Town

E-Z 8 Motel Old Town
2.5 star property
Old Town San Diego, 3.1 km from Mission Bay
6.6 out of 10, (2,114 reviews)
"Yes my dog was comfortable. Yes the shuttle was very convenient. Room was clean staff friendly. Will recommend to family and friends "
United States
Losi
The price is NZ$164
includes taxes & fees
3 May - 4 May
E-Z 8 Motel Old Town
Lowest nightly price found within the past 24 hours based on a 1 night stay for 2 adults. Prices and availability subject to change. Additional terms may apply.

Compare popular hotels close to Mission Bay

Property
Property class
Guest rating
Breakfast included
Pool
Spa
Pet-friendly
WiFi included
Living area
ITH Mission Beach Backpacker Hostel
2.0 star property
9.4
Exceptional
209 reviews
View
2 outdoor pools, a heated pool, pool loungers
The Dana on Mission Bay
3.5 star property
9.0
Wonderful
4,312 reviews
View
5 outdoor pools, a heated pool, pool umbrellas, pool loungers
Paradise Point Resort & Spa
4.0 star property
8.8
Excellent
2,558 reviews
View
Outdoor pool, a heated pool
The Wayfarer San Diego
4.0 star property
9.4
Exceptional
1,767 reviews
View
In-room safe, desk, laptop workspace, blackout curtains
Holiday Inn Express San Diego - SeaWorld Area by IHG
2.5 star property
9.0
Wonderful
1,004 reviews
View

Top Mission Bay Hotel Reviews

Hotels near other Mission Bay attractions

Find out more about Mission Bay

Top reasons to visit Mission Bay

  • Thrilling Water Activities: Experience exciting jet boat tours and various water sports, perfect for adventure seekers.
  • Beautiful Beaches: Relax on the stunning Mission Bay Beach, ideal for sunbathing and beachside fun.
  • Scenic Promenade: Enjoy breathtaking sea views while walking or cycling along the picturesque Mission Bay promenade.
  • Family-Friendly Parks: Explore urban parks that offer great spaces for family activities and relaxation.
  • Diverse Accommodation: Choose from a range of lodging options, from beachfront resorts to budget-friendly hotels.

Find great hotels near Mission Bay

Experience the perfect blend of relaxation and adventure in Mission Bay, San Diego, with a variety of accommodation options to suit every budget. From beachfront resorts to pet-friendly hotels, you'll find the ideal spot for a memorable getaway. Whether you’re looking for cheap accommodation with stunning sea views or a business-themed stay, Mission Bay has something for everyone, ensuring a delightful holiday for all types of travellers.

  • Wyndham San Diego Bayside: Nestled conveniently 8.0km from Mission Bay, Wyndham San Diego Bayside is a 4-star haven for those seeking a pet-friendly and family-oriented experience. This hotel excels in catering to business travellers, featuring extensive amenities such as accessible business centres, multiple meeting rooms, and a well-equipped conference space. Families are well taken care of with complimentary cribs and a warm atmosphere for children. Notably, the hotel welcomes pets, allowing furry companions to join in on the adventure, making it an ideal choice for those travelling with pets.
  • Days Inn by Wyndham San Diego Hotel Circle: Located a mere 6.4km from Mission Bay, Days Inn by Wyndham San Diego Hotel Circle is a vibrant 3-star option appealing to families and adventure seekers, with a welcoming stance towards the LGBTQIA community. Guests can immerse themselves in a variety of adventure sports, including waterskiing, surfing, and snorkeling, all available nearby. The hotel ensures families are comfortable with free cribs for little ones, creating a friendly and inclusive environment for all guests, making it a perfect base for a fun-filled vacation.
  • Best Western Seven Seas: Situated 6.4km from Mission Bay, Best Western Seven Seas is a fantastic 3-star choice for business and adventure travellers alike. The hotel offers essential business amenities, including accessible business centres and meeting rooms, ensuring convenience for corporate guests. Families will appreciate the free cribs and the suitability for children, while adventure enthusiasts can indulge in activities like hiking, parasailing, and waterskiing nearby. This hotel strikes a balance between work and play, making it a versatile option for various types of travellers.

Where to stay near Mission Bay

Mission Bay, San Diego, offers a delightful blend of family-friendly fun and stunning coastal scenery. Enjoy beachside activities at Mission Bay Beach, where friendly locals create a welcoming atmosphere. Explore the waterfront parks and indulge in water sports, or simply relax and soak up the sun. Close by, the vibrant neighbourhoods provide budget-friendly options and historical charm, ensuring a memorable holiday experience for everyone.

  • San Diego: A vibrant coastal city, San Diego offers an eclectic mix of attractions and experiences. Nestled around the stunning Mission Bay, the city is a year-round destination for families, outdoor enthusiasts, and beachgoers alike. With peaks in visitor numbers during March to April and July, you'll find plenty of activities to engage in, from exploring world-class theme parks to relaxing on pristine beaches. San Diego is also home to fantastic shopping centres and resorts, making it an ideal base for your vacation.
  • Mission Beach: Just a couple of miles from Mission Bay, Mission Beach is a lively neighbourhood perfect for outdoor and family fun. The area is particularly popular during the summer months, from June to August, attracting visitors with its bustling boardwalk and access to an amusement park. With beautiful beaches and a scenic bay, Mission Beach is a great spot for sunbathing, surfing, or enjoying a leisurely stroll along the waterfront. The local vibe is relaxed and friendly, making it easy to unwind and soak up the sun.
  • La Jolla: Located approximately 8.0km from Mission Bay, La Jolla is a picturesque coastal city renowned for its stunning beaches and upscale shopping. This area sees a similar influx of visitors during the summer months, with families flocking to its beautiful shores. La Jolla boasts a charming blend of educational venues and shopping centres, ensuring there's something for everyone. Don’t miss the chance to explore its scenic coastline, where you can enjoy fantastic views and perhaps even catch a glimpse of local marine wildlife.

Things to do near Mission Bay

Mission Bay offers a range of exciting activities, including thrilling jet boat tours and various water activities for adventure seekers. You can enjoy local attractions and free spots perfect for relaxation, making it an ideal retreat. Don’t miss the chance to spot whales and dolphins while soaking in the natural beauty and vibrant entertainment options nearby.

Shopping

For shopping in Mission Bay, visit Fashion Valley Mall, just 4.8km away, offering a variety of shops and entertainment. Also, check out the Ocean Beach Farmers Market, 4.8km from Mission Bay, for local produce and crafts. The Cave Store, 9.7km away, features unique souvenirs.

Recreation

Explore De Anza Cove Park for serene walks and picnics, surrounded by nature’s beauty, perfect for relaxation. For a vibrant atmosphere, head to Petco Park for lively sports events or enjoy concerts at The Rady Shell at Jacobs Park, both providing an energetic escape from everyday life.

Adventure

At Barnes Tennis Center, located 3.2km from Mission Bay, immerse yourself in a vibrant tennis atmosphere with excellent facilities. Experience the stunning Bayshore Bikeway, 9.7km away, perfect for cycling along the coast. For tennis enthusiasts, the Coronado Tennis Center, 11.3km distant, offers a fantastic adventure vibe.

Nightlife

In Mission Bay, Humphreys Concerts by the Bay offers a romantic atmosphere with live performances, while Boomers San Diego provides adventurous fun with arcade games. For a unique experience, visit the Balboa Park Carousel, which brings delightful outdoor vibes just a short drive away.

*Distances are measured in a straight line; actual driving distances may vary depending on the route.

Booking tips and Expedia advantages for Mission Bay

To save money on your visit to Mission Bay, consider travelling during the off-peak months of November to January when accommodation prices are lower, especially on Tuesdays. Avoid weekends, particularly Saturdays, for better rates. Use Expedia’s search tool to filter for budget-friendly options and eco-certified hotels. You can also save by bundling your hotel, flights, and activities into a package deal. Look for free activities in the area to enhance your experience without breaking the bank.

  • The most and least expensive months on average to stay in a hotel: The cheapest months to stay around Mission Bay are November to January, where the prices are slightly lower. This is in comparison to June to August, where prices are slightly higher.
  • The most and least expensive days on average to stay in a hotel: The least expensive day to stay around Mission Bay is Tuesday. The most expensive day to stay around Mission Bay is Saturday.
  • Find cheap hotels on Expedia: Expedia’s search tool enables you to set your budget, choose your ideal location, and much more. You can arrange your search results to display prices from lowest to highest, making it easy to find the most affordable accommodation options first. Additionally, you have the option to refine your choices by hotel type; for instance, selecting the Eco-certified filter will highlight sustainable and environmentally-friendly hotels that are available for booking.
  • Consider bundling your trip: You can save some cash by combining your Mission Bay hotel reservation with your flights and activities through an Expedia package deal.

Find the best attractions near Mission Bay

Mission Bay in San Diego offers a delightful mix of attractions for every type of traveller, from beach lovers to culture enthusiasts. You can enjoy stunning sea views along the Mission Bay promenade, relax on Mission Bay Beach, or explore the maritime museum. The area's urban parks provide a perfect setting for family experiences, making it an ideal destination for a memorable holiday.

  • Mission Beach: Experience the quintessential Californian beach vibe at Mission Beach, where golden sands meet the Pacific Ocean. Enjoy sunbathing, beach volleyball, and a lively boardwalk perfect for cycling or strolling. This vibrant spot is ideal for relaxation and fun.
  • Hotel Circle: Discover the bustling atmosphere of Hotel Circle, a hub of accommodation and dining options. Just a short drive from Mission Bay, this lively street offers easy access to various attractions, making it a convenient base for exploring San Diego.
  • University of San Diego: Explore the stunning architecture and beautiful campus of the University of San Diego. With its Spanish Renaissance style and scenic views, this modern college campus is perfect for a leisurely walk and offers a glimpse into student life.

The nearest major airports for your trip to Mission Bay

When visiting Mission Bay in San Diego, you'll find that San Diego International Airport (SAN) is the most convenient, located 6.4km away. Excellent accommodation options nearby include the 5-star Pendry San Diego, situated 4.8km from the airport, and The US Grant, also 3.2km away. Both hotels provide easy access to SAN. Alternatively, you can consider flying into Tijuana International Airport (TIJ), 23.2km away, with nearby hotels like Quartz Hotel & SPA and Real Inn Tijuana, both 4.8km from TIJ. Lastly, Carlsbad Airport (CLD) is 26.4km away, featuring the luxurious Park Hyatt Aviara Resort just 3.2km from the airport.

Frequently asked questions

What's the area like around Mission Bay?
Mission Bay is located in a family-friendly area of San Diego known for its array of dining options and popular zoo. If you're looking for a convenient place to stay, take a look at the 48 hotels and other accommodation options you'll find within a mile.
What's the best place to stay near Mission Bay?
Paradise Point Resort & Spa is one of the top choices for your stay based on our traveller data, and this resort offers a marina and 5 outdoor pools. It's located just a short 0.8 mi (1.3 km) from Mission Bay. Another good option is San Diego Mission Bay Resort, located just 0.9 mi (1.5 km) away.
How many hotels will I find near Mission Bay?
Expedia has 48 hotels and other accommodation options within a mile from Mission Bay.
If I need to cancel the hotel reservation for my stay near Mission Bay, will I receive a refund?
Yes! You'll find that most room reservations are fully refundable if cancelled prior to the hotel's cancellation deadline, which is usually within 24-48 hours of the scheduled arrival. If you booked a non-refundable reservation, you might still have the option to cancel and get a refund within 24 hours of booking. Enter your dates, click on "Search", then you can filter by "fully refundable" to view the best deals near Mission Bay.
What can I see and do near Mission Bay?
Study the collections at Maritime Museum of San Diego, Whaley House Museum or Junipero Serra Museum. Casa de Machado y Stewart, McCoy Museum House and Casa de Estudillo are well-known local landmarks worth a visit. You can catch a show at Humphreys Concerts by the Bay, Cygnet Theater Company and Red Spade Theater.

Explore a world of travel with Expedia