Top Hotels Near Mission Bay in San Diego

Search over 1 million properties and 550 airlines worldwide

Search over 1 million flights, hotels, packages, and more

No Expedia cancellation fee to change or cancel almost any hotel reservation

3949 Cheap Hotels Near Mission Bay

The Dana on Mission Bay
3.5 out of 5
1.2 km from Mission Bay
Free CancellationReserve now, pay when you stay
NZ$318
per night
Mar 6 - Mar 7
4.1/5Very Good! (8,952 reviews)

"As a family of 6, it was nice that they could accommodate two rooms next to each other. The room had a great view of the pool (and nightly movie) and it was quiet. The only draw back was that the room had ants. The first couple of nights it was a few here and there but by the third night they were ..."…"

Reviewed on 21 Feb. 2020

The Dana on Mission Bay
Paradise Point Resort & Spa
4 out of 5
0.3 km from Mission Bay
Free CancellationReserve now, pay when you stay
NZ$324
per night
Mar 24 - Mar 25
4.3/5Excellent! (1,341 reviews)

"Beautiful and well maintained place excellent service."…"

Reviewed on 22 Feb. 2020

Paradise Point Resort & Spa
Hyatt Regency Mission Bay Spa and Marina
4 out of 5
1.4 km from Mission Bay
Free Cancellation
NZ$270
per night
Mar 8 - Mar 9
4/5Very Good! (268 reviews)

"We loved the location. It wasn't convenient for walking to other neighborhoods but it was lovely to walk around this area, near the water and marina. We used ride shares, taxis and public transport to get around town. The hotel is older but very well maintained. WiFi was excellent- never had issues ..."…"

Reviewed on 20 Feb. 2020

Hyatt Regency Mission Bay Spa and Marina
Bahia Resort Hotel
3.5 out of 5
0.7 km from Mission Bay
Free CancellationReserve now, pay when you stay
NZ$283
per night
Mar 5 - Mar 6
4.1/5Very Good! (6,222 reviews)

"I loved the room and the location. Everything was 15 minutes away. However the bikes, paddle boards, and rentals were all an additional charge."…"

Reviewed on 22 Feb. 2020

Bahia Resort Hotel
Catamaran Resort and Spa
4 out of 5
1.6 km from Mission Bay
Free CancellationReserve now, pay when you stay
NZ$318
per night
Mar 1 - Mar 2
4.2/5Very Good! (3,133 reviews)

"Loved the koi ponds and gardens. Restaurant had a limited menu but the food was delicious. Easy access to the beach on the bay, and a short walk to mission beach. The suite had a kitchen and was worth the extra cost. We really enjoyed our stay."…"

Reviewed on 24 Feb. 2020

Catamaran Resort and Spa
San Diego Mission Bay Resort
4 out of 5
0.5 km from Mission Bay
Free CancellationReserve now, pay when you stay
NZ$294
per night
Mar 1 - Mar 2
3.7/5Good! (2,016 reviews)

"Loved the pool and the pool area. Very nice hotel. Would have liked to be able to rent movies from the room."…"

Reviewed on 26 Jan. 2020

San Diego Mission Bay Resort
Blue Sea Beach Hotel
3.5 out of 5
1.7 km from Mission Bay
Free CancellationReserve now, pay when you stay
NZ$293
per night
Mar 3 - Mar 4
4.4/5Excellent! (2,099 reviews)

"Pleasantly surprised. Very clean and super friendly staff. Kids enjoyed the pool and beach. The weekend nightlife gets a little rowdy in the surrounding area with all the bars and restaurants nearby. But when we didn’t want to be a part of that, the hotel itself was pretty quiet. Centrally located ..."…"

Reviewed on 22 Feb. 2020

Blue Sea Beach Hotel
New Listing! Bay-view W/ Hot Tub & Sauna 4 Bedroom Home
Heritage Inn San Diego Near SeaWorld
2 out of 5
2.2 km from Mission Bay
Get Rates
2.4/5 (2,056 reviews)

"I didn't like the breakfast selection and the rooms need updating. But other then that everything was great. Nice staff. And maids came everyday and did what they were suppose to."…"

Reviewed on 10 Feb. 2020

Heritage Inn San Diego Near SeaWorld
Wyndham Garden San Diego Near SeaWorld
3 out of 5
2.5 km from Mission Bay
Free CancellationReserve now, pay when you stay
NZ$134
per night
Feb 25 - Feb 26
3/5 (5,147 reviews)

"The check in staff was super friendly, very informative, and we had a nice stay. The hotel is currently being remodeled so there were areas that were difficult to park in or access."…"

Reviewed on 20 Feb. 2020

Wyndham Garden San Diego Near SeaWorld
Don't see what you're looking for?
See all available properties in Mission Bay
View all properties
Lowest nightly price found within the past 24 hours based on a 1 night stay for 2 adults. Prices and availability subject to change. Additional terms may apply.

Frequently asked questions

Recently booked Mission Bay hotels

Recent Reviews in Mission Bay

More trip options