
Boutique Hotels & Resorts in Shinjuku from NZ$329
- Change your mindBook hotels with free cancellation
- Be pickySearch almost a million properties worldwide
Check availability on Shinjuku Boutique Hotels
Our top choices for Shinjuku boutique hotels
The price is NZ$1,573
4 Mar - 5 Mar
The price is NZ$1,063
24 Feb - 25 Feb
The price is NZ$1,534
24 Feb - 25 Feb
The price is NZ$731
23 Feb - 24 Feb
The price is NZ$1,711
5 Mar - 6 Mar

9.0 out of 10, Wonderful, (1,006 reviews)
The price is NZ$360
26 Feb - 27 Feb

9.4 out of 10, Exceptional, (1,008 reviews)
The price is NZ$329
8 Mar - 9 Mar
Lowest nightly price found within the past 24 hours based on a 1 night stay for 2 adults. Prices and availability subject to change. Additional terms may apply.
Top Shinjuku Hotel Reviews

Shinjuku Granbell Hotel
10/10 Excellent
Frequently asked questions
Explore a world of travel with Expedia
- Boutique Hotels in Tokyo Prefecture
- Beach Hotels in Tokyo Prefecture
- Pet Friendly Hotels in Tokyo Prefecture
- Casino Hotels in Tokyo Prefecture
- Lgbt Welcoming Hotels in Tokyo Prefecture
- Historic Hotels in Tokyo Prefecture
- Spa Hotels in Tokyo Prefecture
- Business Hotels in Tokyo Prefecture
- Family Hotels in Tokyo Prefecture
- Hotels with Pool in Shinjuku
- Casino Hotels in Shinjuku
- Hotels with Parking in Shinjuku
- Lgbt Welcoming Hotels in Shinjuku
- Green Hotels in Shinjuku
- Cheap Hotels in Shinjuku
- Historic Hotels in Shinjuku
- Business Hotels in Shinjuku
- Pet Friendly Hotels in Shinjuku
- Spa Hotels in Shinjuku
- Family Hotels in Shinjuku
- Adventure Sport Hotels in Shinjuku
- Luxury Hotels in Shinjuku
- Golf Hotels in Shinjuku
- Romantic Hotels in Shinjuku
- Luxury Hotels in Yotsuya
- Boutique Hotels in Nishi-Shinjuku
- Boutique Hotels in Kabukicho
- Casino Hotels in Kabukicho
- Family Hotels in Kabukicho
- Golf Hotels in Kabukicho
- Apartments in Waseda Station
- Hostels in Shinjuku Station
- Apartments in Takadanobaba Station
- Hostels in Nishi-shinjuku Station
- Apartments in Tokyo Prefecture
- Capsule Hotels in Tokyo Prefecture
- B&B in Tokyo Prefecture
- Hotels near Shinjuku Station
- Tokyo Hotels
- Shinjuku Hotels
- Hotels near Nishi-shinjuku-gochome Station
- Hotels near Shinjuku I Land
- Nishi-Shinjuku Hotels
- Okubo Hotels
- Hotels near Meiji-jingu Gaien Ice Skating Rink
- Yotsuya Hotels
- Hotels near Isetan Department Store Shinjuku
- Yoyogi Hotels
- Sendagaya Hotels
- Hotels near Seibu-Shinjuku Station
- Kabukicho Hotels
- Hotels near Ninja Trick House In Tokyo
- Hotels near Harajuku Station
- Hotels near Shinjuku Sumitomo Building
- Hotels near Meiji Jingu Shrine
- Tokyo Prefecture Hotels
- Hotels near Shinjuku Gyoen National Garden
- Hotels near Yoyogi Park
- Nishiwaseda Hotels
- Hotels near Shinjuku-sanchome Station
- Hotels near New National Theatre Tokyo
- Hotels near Yoyogi Station
- Shinjuku Golden Gai Hotels
- Khaosan Hotels in Shinjuku Golden Gai
- Independent Hotels in Harajuku
- Prince Hotels in Harajuku
- Apa Hotels in Central Tokyo
- Fujita Kanko Hotels in Shinjuku
- Mandarin Oriental Hotel Group in Shinjuku
- Hyatt Hotels in Shinjuku
- Apa Hotels in Shinjuku
- Accor Hotels in Shinjuku
- Marriott Hotels & Resorts in Shinjuku
- Visit Harajuku
- Visit Shinjuku
- Visit Kabukicho
- Visit Takadanobaba
- Visit Sendagaya
- Takeshita Street
- Seiji Togo Memorial Sompo Japan Museum of Art
- Meiji Jingu Stadium
- Omotesando Hills
- Teikoku Databank Historical Museum
- Waseda University
- Tokyo Prefecture Holidays
- Harajuku Holidays
- Toyama Park
- Shinjuku Gyoen National Garden
- Shinjuku Holidays































