Isahaya Hotel & Accommodation Deals 2026 from NZ$83 - Fully Refundable Options

An aerial view of a rural landscape with fields, a small town, and distant mountains.

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Our top choices for Isahaya hotels

A hotel room with a bed, a desk, a chair, a window with a city view, and a wall-mounted TV.

A store with shelves of folded clothing and a map on the wall.

A reception desk with a computer, a plant, and a cash register.

A laundry facility with four washing machines and four dryers, each labeled with a number.

1. Super Hotel Nagasaki Isahaya Natural Hot Spring

Isahaya

KITANO

NZ$143

12 Oct - 13 Oct

A multi-story building with a flat facade, balconies, and a parking lot in front.

A spacious room with a ping pong table, two hanging chairs, and patterned carpet.

A hotel room with two beds, a desk with a computer, a sink, and an air conditioning unit.

A room with two ping pong tables, a red chair, and exercise bikes.

2. Tennen Onsen Hotel Kinshai

Isahaya

HIROKI

NZ$100

13 Oct - 14 Oct

A view through a window with a view of a garden with various trees and bushes.

A modern lobby with seating areas, a bar, and a bookshelf.

A chef performing a flambé with fire on a table.

A traditional Japanese-style hotel room with tatami flooring, two beds, a television, and a view of greenery through large windows.

3. Hotel Flags Ishihaya Nagasaki

Isahaya

cat

NZ$100

13 Oct - 14 Oct

A modern waiting area with two sofas, a coffee table, and a reception desk with computers.

A hotel room with a bed, a desk with a computer, a TV, and a wardrobe.

A hotel room with two beds, a desk with a computer, a chair, a television, and a window with curtains.

A meal in a compartmentalized container with rice, macaroni, vegetables, and fried items.

4. New Station Hotel

Isahaya

Kenji

NZ$123

7 Oct - 8 Oct

A modern building entrance with a set of stairs leading to a glass door entrance.

A reception area with a wooden reception desk, a seating area with a sofa, and a bookshelf.

A hotel room with a sofa, two beds, a TV, and a window with curtains.

A modern hotel lobby with wooden tables and chairs, a reception desk, and a view of the city through large windows.

5. Isahaya Terminal Hotel

Isahaya

koujirou

NZ$131

5 Oct - 6 Oct

A room with a large window offering a view of a lush green landscape, a wooden table with a vase, and a curtain partially drawn.

A modern hotel room with a brown velvet sofa, a small coffee table, a flat-screen TV, and a kitchenette area with wooden cabinets and a microwave.

An outdoor deck with wicker furniture, a wooden table, and umbrellas.

6. Morino Villa & Resort

Isahaya

Maximo

NZ$154

6 Oct - 7 Oct

A multi-story hotel with a modern design, featuring a prominent entrance and a sign indicating it is a hotel.

A bento box with rice, macaroni, vegetables, and fried items.

A spacious lounge area with multiple sofas and a coffee table, large windows offering a view of the outdoors, and a chandelier hanging from the ceiling.

A multi-story hotel with a modern design, featuring a prominent entrance and multiple balconies.

7. New Station Hotel Premiere

Isahaya

James

NZ$112

1 Nov - 2 Nov

A hotel lobby with a reception desk, seating area, and large windows.

A buffet line with various food items and condiments.

A hotel room with two beds, a desk, a chair, an air conditioning unit, and a painting on the wall.

A laundry facility with multiple coin-operated washers and dryers, a step for access, and a potted plant.

8. Hotel Route-Inn Isahaya Inter

Isahaya

?????

NZ$157

18 Oct - 19 Oct

A modern multi-story building with a parking lot in front.

A modern bathroom with multiple sinks, mirrors, and hand dryers.

A hotel room with a bed, a desk with a chair, a television, and a mirror.

A balcony with a view of a cityscape, including a body of water and mountains.

9. KIKITSU Station Hotel

Isahaya

Barb

NZ$110

26 Oct - 27 Oct

A modern reception area with a glass partition, a reception desk, seating area, and large windows.

A hotel room with two beds, each with a pillow and a folded towel. There is an air conditioning unit above the window and wall-mounted lights above the beds.

A modern bathroom with a bathtub, a sink, and a toilet.

A modern multi-story building with balconies, large windows, and a flat roof.

10. Omura Station Hotel Nagasaki Airport

Omura

Kazuhiko

NZ$104

5 Oct - 6 Oct

A clear indoor pool with a water fountain feature, surrounded by dark stone walls and a wooden ceiling.

A hotel room with two beds, beige walls, a painting of flowers, and a window.

A multi-story hotel with illuminated windows and balconies, featuring a sign in a foreign language.

A view of a coastal cityscape with a prominent building and a parking lot.

11. Jisco Hotel Obama Onsen

Obama Onsen

Alexander

NZ$110

18 Oct - 19 Oct

A Comfort Inn hotel with a modern design, featuring a flat facade, multiple windows, and a covered entrance.

A hotel room with a bed, a desk, and a chair.

A reception area with an orange counter, white walls, and a wooden floor.

A laundry facility with multiple washing machines and dryers, each with instructional posters on the wall.

12. Comfort Inn Nagasaki Airport

Omura

Asya

NZ$90

12 Oct - 13 Oct

A modern hotel lobby with white leather sofas, a coffee table, and potted plants.

A hotel room with a bed, a desk with a lamp, a television, and an air conditioning unit.

The exterior of Omura Station Hotel with a modern design, featuring a prominent entrance with glass doors and a tiled facade.

A modern dining area with multiple tables and chairs, recessed ceiling lighting, and large windows.

13. Omura Station Hotel

Omura

Yasuhiko

NZ$126

19 Oct - 20 Oct

A hotel room with a bed, a desk with a computer, a television, and a microwave.

A parking lot with several train carriages and a red sign for 'HOTEL R9 The Yard'.

A reception area with a wooden counter, two wall-mounted speakers, and a small table.

A compact hotel structure with a sign indicating 'Hotel R9 The Yard' and '19 Hotels Group'.

14. HOTEL R9 The Yard Omura

Omura

Tsz Kin

NZ$85

12 Oct - 13 Oct

A buffet with a variety of food items, a seating area with chairs, and a view of the city through large windows.

A traditional Japanese-style room with two beds, a wooden chair, a small table, and a large window with a view.

A multi-story hotel with a prominent vertical light feature on the facade, surrounded by trees and streetlights.

15. THE GLOBAL VIEW Nagasaki

Nagasaki

Chris

NZ$132

5 Oct - 6 Oct

A spiral staircase with a clock at the top, a stained glass window, and a wooden sculpture.

A courtyard with tiled flooring, outdoor seating, and a staircase leading to an upper level.

A television mounted on a wooden cabinet with a menu interface displaying various streaming services.

A multi-story hotel with a white facade, multiple balconies, and a clear blue sky in the background.

16. Hotel Monterey Nagasaki

Nagasaki

TAKAO

NZ$126

5 Oct - 6 Oct

The entrance to Omura Central Hotel with a glass facade, a red carpet, and bicycles parked outside.

A Japanese-style building with a garden.

A multi-story building with balconies, a parking lot, and a view of a cityscape with mountains in the distance.

A hotel room with a bed, bedside lamps, a TV, a desk, and a mini-fridge.

17. Omura Central Hotel

Omura

Jan

NZ$162

18 Oct - 19 Oct

A modern spa area with a hot tub, reclining chairs, a flat-screen TV, and a view of greenery through large windows.

An outdoor seating area with tables and chairs, umbrellas, and a building entrance with a sign.

A modern interior with a bar area, seating with round tables, and a view through large windows.

A modern spa area with lounge chairs, a heated floor, a sauna, and a wall with a vertical garden.

18. FAV LUX NAGASAKI

Nagasaki

Esslyn

NZ$183

5 Oct - 6 Oct

A hot spring surrounded by rocks and vegetation, with a wooden structure on the left and lanterns along the edge.

A spacious lobby with large windows offering a view of a serene lake and trees. There are several striped armchairs and a floor lamp.

A modern building with a flat roof, large windows, and a seating area with chairs and tables.

A modern reception area with a wooden reception desk, two wall-mounted lamps, and a large abstract metallic wall art piece.

19. Hoshino Resorts KAI Unzen

Unzen

Gabrielle

NZ$698

4 Nov - 5 Nov

A modern hotel lobby with a reception desk, glass doors, and a clean, tiled floor.

A buffet setup with various food items and beverages.

A sign with gold lettering on a white wall, indicating a location or establishment name.

A hotel building with a sign in Japanese.

20. JR KYUSHU HOTEL Nagasaki

Nagasaki

Maria A

NZ$116

12 Oct - 13 Oct

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Stay near popular Isahaya attractions

Isahaya Park

8.4/10 (11 reviews)

Built on ancient Isahaya Castle ruins, this park features the stunning Megane Bridge and 600-year-old camphor tree. Visit in April when thousands of azaleas transform the landscape during the annual festival.

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Konagai Culture Hall

6.0/10 (2 reviews)

This community hub hosts local events and offers a welcoming library for quiet study. Look for the whimsical fruit-shaped bus stops nearby—they make for delightful photo opportunities.

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Sazanka Herb Museum

7.0/10 (2 reviews)

This fragrant highland garden showcases a diverse collection of aromatic herbs in a serene setting. Explore the grounds, join an aroma class, or savour herbal teas at the garden café after your botanical journey.

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Todoroki Fall

6.0/10 (1 review)

This 12-meter waterfall creates a thunderous roar as it cascades into crystal-clear pools below. Explore the surrounding valley's lush trails, where 30 smaller falls create a tranquil forest symphony.

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Kantaku no Sato

7.4/10 (3 reviews)

This educational complex showcases Isahaya Bay's reclamation history and marine life through its Kantaku Museum and Mutsugoro Aquarium. Enjoy horseback riding, boating, or a 100-meter zipline in the adventure park.

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Megane Bridge

This historic double-arch stone bridge creates the illusion of eyeglasses when reflected in water. Visit Isahaya Park to see this Important Cultural Property, especially beautiful during spring's Azalea Festival.

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Tsukinooka Park

Explore the great outdoors at Tsukinooka Park, a lovely green space in Isahaya. Wander the Chinatown and waterfront in the area.

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Kannonji Temple

6.0/10 (1 review)

Kannonji Temple offers a serene retreat with traditional Buddhist architecture in Isahaya City, Nagasaki. Visit in early morning to experience the peaceful grounds and cultural artefacts in contemplative solitude.

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Learn more about Isahaya

Discover the ancient Isahaya Spectacles Bridge and explore Isahaya Park's cherry blossoms in spring for iconic photo opportunities. Nearby Unzen-Amakusa National Park offers volcanic hiking trails, while Isahaya's summer festivals showcase traditional dance performances and local seafood specialities.

See all hotels in Isahaya

A stone bridge over a calm river with lush greenery and clear blue sky.

Top Isahaya Hotel Reviews

Recent Reviews in Isahaya

Candeo Hotels Nagasaki Shinchi Chinatown

10/10 Excellent

"Great central location. Staff at breakfast buffet exceptionally warm and friendly."

Hotel Forza Nagasaki

10/10 Excellent

"The rooms are well designed and taken care of. :)"

JR KYUSHU HOTEL Nagasaki

10/10 Excellent

"The location was incredibly convenient, right next to the station and directly connected to a convenience store and shopping facilities."

Hotel Okura JR Huis Ten Bosch

10/10 Excellent

"I enjoyed my stay"

Dormy Inn Nagasakiekimae Hot Springs

10/10 Excellent

"Hot bath at the top floor is amazing! Breakfast spread was huge and the food was delicious. There's also free ramen for supper."

Hotel Amsterdam Huis Ten Bosch

10/10 Excellent

"방 컨디션도 좋도 직원들이 친절해요. 테마파크 중심에 있어서 어디든 가기 좋은 위치예요"

Wataya Besso

10/10 Excellent

"露天風呂"

Belleview Nagasaki Dejima

10/10 Excellent

"A very friendly and wel ome staff and front desk with management care and hospitality. Lool.forward to future booking in a tranquility and peaceful hotel"

Hotel Nikko Huis Ten Bosch

8/10 Good

"Staff services"

More cheap accommodation in Isahaya

Hotel 21

8-13 Mezamemachi Nagasaki Nagasaki

NZ$83

5 Oct - 6 Oct

5.2/10 (15 reviews)

Tennen Onsen Hotel Kinshai

22-12 Saiwaimachi Isahaya Nagasaki

NZ$100

13 Oct - 14 Oct

8.2/10 Very good! (34 reviews)

Jisco Hotel Obama Onsen

Obamacho Minamihonmachi - 145-2 Unzen Nagasaki

NZ$110

18 Oct - 19 Oct

Isahaya Terminal Hotel

18-1 Eishohigashimachi Isahaya Nagasaki

NZ$131

9 Oct - 10 Oct

Grand Base Nagasaki City

2 39 Tamazonomachi Nagasaki Nagasaki Prefecture

NZ$150

18 Oct - 19 Oct

8.2/10 Very good! (127 reviews)

HOTEL URO - hostel

6-10 Kajiya-machi Nagasaki Nagasaki

NZ$163

3 Nov - 4 Nov

9/10 Wonderful! (2 reviews)

Frequently asked questions

What is the best area to stay in Isahaya?

The best area to stay in Isahaya is around Isahaya Station, as it offers the most convenience and access to transport links.This central area is the main transport hub for the city. You'll find most of the city's hotels, restaurants, and shops congregated within a short walk of the station's east and west exits. The station itself is a modern facility, connecting JR lines, the Shimabara Railway, and local bus services, making it very easy to explore the wider region.For travellers looking for ease of access and excellent transport connections, staying near Isahaya Station is ideal. From here, you can easily catch a train to Nagasaki City, take the Shimabara Railway to the Shimabara Peninsula, or use local buses to reach attractions within Isahaya, such as the Isahaya Park (Isahaya Koen) with its famous Spectacles Bridge.Business travellers will also find this area particularly convenient. Hotels here often cater to their needs, providing amenities like good Wi-Fi and proximity to corporate offices or meeting venues located within the city centre.

What are the best family hotels in Isahaya?

For families travelling to Isahaya, the KIKITSU Station Hotel and the Isahaya Terminal Hotel are excellent considerations.The 3-star KIKITSU Station Hotel, with a rating of 8.6, offers complimentary WiFi and free self-parking, which is very convenient for families with a car. Guests also appreciate the complimentary toiletries provided.Another good option is the Isahaya Terminal Hotel. This hotel caters to families with a child-friendly window design and offers free continental breakfast, ensuring a good start to the day. It also includes complimentary WiFi and toiletries. Isahaya Park is located just 1.0 km away, providing a nearby green space for family outings.

What are the best spa hotels in Isahaya?

For a spa hotel in Isahaya, the Hotel Route-Inn Isahaya Inter is a popular option.This 3-star hotel, with a rating of 8.2, offers a massage service, providing a relaxing experience for guests. Other convenient amenities include free WiFi, free wired internet in public areas, and complimentary self-parking. Guests will also appreciate the air conditioning and free toiletries.

What hotels in Isahaya offer free breakfast?

For a hotel in Isahaya that offers free breakfast, the Isahaya Terminal Hotel is a great option.The Isahaya Terminal Hotel provides complimentary breakfast, ensuring a good start to your day. Guests also benefit from free WiFi and free toiletries. This hotel is conveniently located approximately 1.0 km from Isahaya Park, making it easy to visit a nearby attraction.

What are the best budget hotels in Isahaya?

For budget hotels in Isahaya, excellent options include the New Station Hotel Premiere, Hotel Route-Inn Isahaya Inter, and Hotel Flags Ishihaya Nagasaki.The 3-star New Station Hotel Premiere, with a review rating of 7.8, offers complimentary WiFi and free toiletries, along with free wired internet in public areas. It is conveniently located just 0.6 km from Isahaya Park.Another great choice is the 3-star Hotel Route-Inn Isahaya Inter, rated 8.2. This hotel provides free WiFi, free wired internet in public areas, and free toiletries. Guests can also enjoy the convenience of free self-parking and amenities like air conditioning and massage services.The 3-star Hotel Flags Ishihaya Nagasaki, rated 7.8, is also a highly-rated option. It features free WiFi, free toiletries, and free self-parking, including parking for RVs, buses, and trucks. This hotel is located 0.5 km from Isahaya Park.The Isahaya Terminal Hotel is another budget-friendly option, offering complimentary breakfast, including a continental breakfast, along with free toiletries and free WiFi. It is located 1.0 km from Isahaya Park.Finally, the 3-star New Station Hotel, with a review rating of 7.4, provides free WiFi, free wired internet in public areas, and free toiletries, along with free self-parking. It is situated just 0.5 km from Isahaya Park.

What are the most romantic hotels in Isahaya for couples?

For a romantic hotel in Isahaya for couples, consider the KIKITSU Station Hotel.This 3-star hotel, with an 8.6 rating, offers a lovely experience with balconies available in some rooms, great for enjoying quiet moments together. Guests can also benefit from free WiFi, air conditioning, and complimentary toiletries. The convenience of free self-parking is an added bonus for those travelling by car.

What are the best hotels in Isahaya near Isahaya Park?

For hotels in Isahaya with convenient access to Isahaya Park, consider the Hotel Flags Ishihaya Nagasaki, the New Station Hotel, and the New Station Hotel Premiere.The 3-star Hotel Flags Ishihaya Nagasaki, with a 7.8 rating, is particularly close, located just 0.5 km from Isahaya Park. This hotel offers complimentary WiFi and free self-parking, along with free toiletries.Another option is the 3-star New Station Hotel, rated 7.4, which is also 0.5 km from Isahaya Park. Guests can benefit from free WiFi, free self-parking, and complimentary toiletries.The 3-star New Station Hotel Premiere, with a 7.8 rating, is located 0.6 km from Isahaya Park. It provides free WiFi, free self-parking, and free toiletries.

When is the best time to go to Isahaya?

The best time to visit Isahaya is during spring (March to May) or autumn (September to November) when the weather is mild and pleasant.Spring in Isahaya sees comfortable temperatures, ideal for exploring the city's outdoor attractions. The cherry blossoms, typically blooming in late March to early April, add a beautiful touch to parks and gardens, making it a picturesque time for couples and those who enjoy scenic walks.Autumn also offers agreeable weather with clear skies and cooler temperatures, great for sightseeing without the heat and humidity of summer.

Can I cancel my hotel reservation on Expedia?

You can cancel your hotel reservation on Expedia, although it depends on the cancellation policy of your booking. Most bookings are refundable if cancelled within 24 to 48 hours of the scheduled arrival. Be sure to check your booking confirmation for the exact cancellation policy. If free cancellation is available, you can cancel directly through your Expedia account by logging in, going to 'My Trips' and selecting your reservation. To find flexible deals, filter your search by 'Fully refundable property' for hotels in Isahaya.

How can I save on a hotel booking in Isahaya with Expedia?

One Key™—Expedia's free travel rewards program—gives you instant access to discounts with Member Prices on Isahaya hotels. Plus, you'll earn OneKeyCash™* on eligible bookings to use on future trips. Booking an Expedia hotel and flight package is another great way to save, where bundling can result in significant savings. *Excludes taxes and fees. OneKeyCash is not redeemable for cash and can only be used on Expedia and other participating brands.

How much is the nightly rate for a hotel in Isahaya?

Prices for hotels in Isahaya often vary, but you can find a great deal from NZ$83 on Expedia. All sorts of factors affect price, such as the time of year or the days of the week you choose for your stay. Find the best deals by being flexible with your dates, and sort search results by 'Price: low to high' for our cheapest rates.

Explore a world of travel with Expedia

Nagasaki Holiday Rentals

Activities in Nagasaki

Book Hotels in Isahaya on Expedia.co.jp

Search Isahaya hotels

Change your mind

Treat yourself

Be picky

Go beyond your typical stay in Isahaya

Check prices for these dates

Filter by

Property class

Guest rating

Our top choices for Isahaya hotels

1. Super Hotel Nagasaki Isahaya Natural Hot Spring

2. Tennen Onsen Hotel Kinshai

3. Hotel Flags Ishihaya Nagasaki

4. New Station Hotel

5. Isahaya Terminal Hotel

6. Morino Villa & Resort

7. New Station Hotel Premiere

8. Hotel Route-Inn Isahaya Inter

9. KIKITSU Station Hotel

10. Omura Station Hotel Nagasaki Airport

11. Jisco Hotel Obama Onsen

12. Comfort Inn Nagasaki Airport

13. Omura Station Hotel

14. HOTEL R9 The Yard Omura

15. THE GLOBAL VIEW Nagasaki

16. Hotel Monterey Nagasaki

17. Omura Central Hotel

18. FAV LUX NAGASAKI

19. Hoshino Resorts KAI Unzen

20. JR KYUSHU HOTEL Nagasaki

Stay near popular Isahaya attractions

Isahaya Park

Konagai Culture Hall

Sazanka Herb Museum

Todoroki Fall

Kantaku no Sato

Megane Bridge

Tsukinooka Park

Kannonji Temple

Learn more about Isahaya

Top Isahaya Hotel Reviews

Recent Reviews in Isahaya

Candeo Hotels Nagasaki Shinchi Chinatown

Hotel Forza Nagasaki

JR KYUSHU HOTEL Nagasaki

Hotel Okura JR Huis Ten Bosch

Dormy Inn Nagasakiekimae Hot Springs

Hotel Amsterdam Huis Ten Bosch

Wataya Besso

Belleview Nagasaki Dejima

Hotel Nikko Huis Ten Bosch

More cheap accommodation in Isahaya

Hotel 21

Tennen Onsen Hotel Kinshai

Jisco Hotel Obama Onsen

Isahaya Terminal Hotel

Grand Base Nagasaki City

HOTEL URO - hostel

Frequently asked questions

Explore a world of travel with Expedia

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