A lakeside lodge with a wooden pier, surrounded by lush greenery and a forested backdrop.

Search San Juan Island hotels

  • Change your mind

    Book hotels with free cancellation

  • Treat yourself

    Sign in to save 10% or more on thousands of hotels
    Sign in

  • Be picky

    Search almost a million properties worldwide

Check prices for these dates

This weekend
13 Nov - 15 Nov
Next weekend
20 Nov - 22 Nov

Filter by

Property class

Guest rating

Selecting then applying a filter from this group will update the results on a new page

Our top choices for San Juan Island hotels

A building with a covered outdoor area, red doors, and hanging flower baskets.

1. Discovery Inn

Discovery Inn
2.0 star property
Friday Harbor
10.0 out of 10, Exceptional, (71 reviews)
"We enjoyed our stay here. The property is very nice. The host were excellent."
United States
Robert
The price is NZ$338
includes taxes & fees
14 Nov - 15 Nov
Discovery Inn
A modern lobby with a reception desk, seating area, and a large window with a view of the sea.

2. Friday Harbor Suites

Friday Harbor Suites
2.5 star property
Friday Harbor
8.6 out of 10, Excellent, (1,003 reviews)
"Probably the nicest little town hotel I have stayed at."
United States
Joe
The price is NZ$298
includes taxes & fees
4 Dec - 5 Dec
Friday Harbor Suites
A waterfront property with a brick building, a dock, and a forested area.

3. Snug Harbor Resort

Snug Harbor Resort
2.5 star property
Friday Harbor
9.8 out of 10, Exceptional, (551 reviews)
"Cute and cozy accommodations, clean and well laid out, lovely setting looking right out at the harbor, and top-notch staff! Both Emily and Nyla (sp?) were super responsive and very friendly and helpful. We really appreciated being able to reach out to real people who answered the phone and were really on site!! Thank you for making our stay so pleasant. We will be back."
United States
Angie
The price is NZ$386
includes taxes & fees
16 Nov - 17 Nov
Snug Harbor Resort
A motel with a row of rooms, a parking lot, and blooming flowers in the foreground.

4. The Orca Inn

The Orca Inn
2.0 star property
Friday Harbor
8.4 out of 10, Very good, (181 reviews)
"Nice place .. walking distance from the ferry ..staff was super nice will stay again"
United States
Andrew
The price is NZ$193
includes taxes & fees
15 Nov - 16 Nov
The Orca Inn
A building with a sign that reads "OFFICE Gift Shop" at the entrance.

5. Earthbox Inn & Spa

Earthbox Inn & Spa
3.0 star property
Friday Harbor
8.8 out of 10, Excellent, (1,002 reviews)
"Great place to stay. Love the spa and amenities."
United States
Troy
The price is NZ$438
includes taxes & fees
15 Nov - 16 Nov
Earthbox Inn & Spa
A two-story house with a front porch, a picket fence, and a small garden area.

6. Tucker House Inn

Tucker House Inn
4.0 star property
Friday Harbor
9.2 out of 10, Wonderful, (310 reviews)
"Will be staying again. Loved it"
United States
Caymin
The price is NZ$287
includes taxes & fees
14 Dec - 15 Dec
Tucker House Inn
Two people relaxing by a fire pit with a view of a harbor and a large ship.

7. Friday Harbor House

Friday Harbor House
3.5 star property
Friday Harbor
9.6 out of 10, Exceptional, (287 reviews)
"Staff and restaurant were exceptionally good"
United States
Randy
The price is NZ$607
includes taxes & fees
15 Nov - 16 Nov
Friday Harbor House
A marina with boats docked in a structured layout, surrounded by water and a distant cityscape.

8. Roche Harbor Resort

Roche Harbor Resort
3.0 star property
Friday Harbor
9.2 out of 10, Wonderful, (463 reviews)
"Hotel was lovely, highly recommend."
United States
Nicco
The price is NZ$372
includes taxes & fees
15 Nov - 16 Nov
Roche Harbor Resort
A marina with boats, a cruise ship, and a forested island.

9. Bird Rock Hotel

Bird Rock Hotel
2.0 star property
Friday Harbor
8.8 out of 10, Excellent, (400 reviews)
"We loved our stay! The room was clean and comfortable and the location was perfect. There were plenty of shops and places to eat nearby, and the air conditioning worked great. It was a beautiful and convenient place to stay for our trip. We would definitely stay here again!"
United States
Vanessa
The price is NZ$308
includes taxes & fees
15 Nov - 16 Nov
Bird Rock Hotel
A large, two-story house with a well-maintained lawn and a brick pathway leading to the front door.

10. The Edenwild Boutique Inn

The Edenwild Boutique Inn
2.5 star property
Lopez Island
9.4 out of 10, Exceptional, (279 reviews)
"The staff was fantastic and the breakfast was one of the best we have had at a hotel."
United States
Frances
The price is NZ$269
includes taxes & fees
14 Nov - 15 Nov
The Edenwild Boutique Inn
A white building with a red roof, surrounded by greenery and a view of the sea.

11. Anacortes Ship Harbor Inn

Anacortes Ship Harbor Inn
3.0 star property
Anacortes
9.0 out of 10, Wonderful, (1,118 reviews)
"Beautiful place, would stay again"
United States
Nicole
The price is NZ$178
includes taxes & fees
15 Nov - 16 Nov
Anacortes Ship Harbor Inn
A covered outdoor seating area with two chairs and a table, overlooking a marina with boats and a forested shoreline.

12. Lopez Islander Resort

Lopez Islander Resort
3.5 star property
Lopez Island
8.6 out of 10, Excellent, (439 reviews)
"Good location with a variety of accommodations."
United States
Jane
The price is NZ$355
includes taxes & fees
15 Nov - 16 Nov
Lopez Islander Resort
An aerial view of a coastal marina with boats docked, surrounded by lush greenery and residential areas.

13. Deer Harbor Inn

Deer Harbor Inn
3.0 star property
Deer Harbor
8.4 out of 10, Very good, (227 reviews)
"It was comfy!"
United States
Nemo
The price is NZ$474
includes taxes & fees
18 Nov - 19 Nov
Deer Harbor Inn
A hotel room with a bed, a microwave, a refrigerator, a TV, and a small kitchenette area.

14. The Marina Inn

The Marina Inn
2.5 star property
Anacortes
9.6 out of 10, Exceptional, (1,002 reviews)
"Great staff, clean nice rooms."
United States
Sari
The price is NZ$213
includes taxes & fees
15 Nov - 16 Nov
The Marina Inn
A wooden deck with a railing, overlooking a lake with a sunset in the background.

15. Rosario Resort

Rosario Resort
2.0 star property
Eastsound
7.8 out of 10, Good, (208 reviews)
"Very nice hotel. Quiet, clean, nice location and beautiful view. and the price very valuable. If I come to Orcas Island, I would stay again."
United States
Alina
The price is NZ$300
includes taxes & fees
14 Dec - 15 Dec
Rosario Resort
A view from a porch with a white railing, overlooking a body of water, mountains, and a grassy area with trees and a fence.

16. Outlook Inn

Outlook Inn
3.0 star property
Eastsound
9.2 out of 10, Wonderful, (536 reviews)
"Amazing stay 10/10"
United States
Saubali
The price is NZ$599
includes taxes & fees
1 Dec - 2 Dec
Outlook Inn
A house with a red exterior, a front porch, and a staircase leading to the entrance.

17. Kangaroo House B&B on Orcas Island

Kangaroo House B&B on Orcas Island
3.5 star property
Eastsound
10.0 out of 10, Exceptional, (187 reviews)
"What a lovely stay! The room was cozy and inviting and the homemade breakfast was absolutely delicious. We felt so at home! We will definitely be back."
United States
Ashley
The price is NZ$446
includes taxes & fees
14 Nov - 15 Nov
Kangaroo House B&B on Orcas Island
A wooden gazebo with glass doors and a stone floor, surrounded by trees.

18. Otters Pond Bed & Breakfast

Otters Pond Bed & Breakfast
4.0 star property
Eastsound
10.0 out of 10, Exceptional, (74 reviews)
"Lovely, relaxing stay with excellent breakfast. "
United States
Juli
The price is NZ$408
includes taxes & fees
20 Nov - 21 Nov
Otters Pond Bed & Breakfast
A traditional half-timbered building with a windmill, surrounded by a well-maintained garden with tulips.

19. Auld Holland Inn

Auld Holland Inn
2.5 star property
Oak Harbor
8.2 out of 10, Very good, (1,005 reviews)
"Great place"
United States
Jennifer
The price is NZ$167
includes taxes & fees
15 Nov - 16 Nov
Auld Holland Inn
Three tubes of PAYA shampoo and conditioner, and a box of the same product.

20. West Beach Resort

West Beach Resort
3.5 star property
Eastsound
9.4 out of 10, Exceptional, (122 reviews)
"Great spot!"
United States
Garrett
The price is NZ$369
includes taxes & fees
18 Nov - 19 Nov
West Beach Resort
Lowest nightly price found within the past 24 hours based on a 1 night stay for 2 adults. Prices and availability subject to change. Additional terms may apply.
View all properties
Save an average of 15% on thousands of hotels when you're signed in
Sign in
Sign up, it's free

Stay near popular San Juan Island attractions

A marina with boats docked, surrounded by forested hills and a town with buildings.

Roche Harbor Marina

9.4/10 (332 reviews)
Explore the waterfront in Roche Harbor with a trip to Roche Harbor Marina. While you're in the area, stroll along the seaside.
See properties

Learn more about San Juan Island

San Juan Island entices visitors with its quaint harbor towns, forest trails and the chance to see a range of wildlife, including endangered orcas.

See all hotels in San Juan Island
A waterfront view of Hotel de Haro with a stone wall and a reflection in the water.

Top San Juan Island Hotel Reviews

Recent Reviews in San Juan Island

Auld Holland Inn

Auld Holland Inn

8/10 Good
"Hotel is easily accessible off of SR20. Parking spots on the back side of the building are very tight compared to other places. Room had minor mold spots in the shower but overall the room looked pretty clean. Staff was very nice. They provide a paper with important information like wifi, checkout time, breakfast hours, etc., which is nice. The TV is an older TV so you have basic cable. I bought a HDMI cable to be able to project my laptop. Overall, can't complain for the price compared to other options on the island!"
Jessica 4-night trip
Posted 5 hours ago
Auld Holland Inn

More cheap accommodation in San Juan Island

Auld Holland Inn

Auld Holland Inn

33575 State Route 20 Oak Harbor WA
The price is NZ$167 per night from 15 Nov to 16 Nov
NZ$167
15 Nov - 16 Nov
includes taxes & fees
8.2/10 Very good! (1,005 reviews)

Explore a world of travel with Expedia