A lighthouse on a rocky coastline with the ocean in the foreground.

Apartments in San Juan Islands

  • Change your mind

    Book hotels with free cancellation
  • Treat yourself

    Sign in to save 10% or more on thousands of hotels
  • Be picky

    Search almost a million properties worldwide

Check prices for these dates

In two weeks
In two months
In three months
In four months

Our top choices for San Juan Islands apartments

1. Madrona Suite - Summer on Orcas Island- rest where sea meets stillness

Madrona Suite - Summer on Orcas Island- rest where sea meets stillness
Eastsound
10.0 out of 10, Exceptional, (28 reviews)
"My husband and I had a lovely stay. The property is beautiful and quiet. Jodi was communicative and accommodating."
United States
Heather H.
The price is NZ$705
includes taxes & fees
11 Sept - 12 Sept
Madrona Suite - Summer on Orcas Island- rest where sea meets stillness

2. Heart of Deer Harbor - Harbormaster House

Heart of Deer Harbor - Harbormaster House
Deer Harbor
10.0 out of 10, Exceptional, (4 reviews)
"Loved the house! Beautiful view, nicely decorated, very comfortable. Will definitely stay here again!"
United States
Cndi B.
The price is NZ$1,113
includes taxes & fees
27 Sept - 28 Sept
Heart of Deer Harbor - Harbormaster House

3. Sunny Island Cliff Side Views

Sunny Island Cliff Side Views
Anacortes
9.8 out of 10, Exceptional, (56 reviews)
"Absolutely lovely"
United States
Taryn H.
The price is NZ$506
includes taxes & fees
31 Aug - 1 Sept
Sunny Island Cliff Side Views

4. Happy Valley Studio - Peaceful rest in nature, just 5 minutes from downtown!

Happy Valley Studio - Peaceful rest in nature, just 5 minutes from downtown!
Anacortes
10.0 out of 10, Exceptional, (37 reviews)
"Was perfect for our pre-ferry evening. Thank you!"
United States
Shawna
The price is NZ$258
includes taxes & fees
8 Sept - 9 Sept
Happy Valley Studio - Peaceful rest in nature, just 5 minutes from downtown!

5. Sea View Inn Summary:

Sea View Inn Summary:
Anacortes
9.2 out of 10, Wonderful, (47 reviews)
"The hosts were very welcoming and accommodating. The space was perfect for our family and pets. The view was incredible. "
United States
Pamela W.
The price is NZ$504
includes taxes & fees
13 Sept - 14 Sept
Sea View Inn Summary:

6. The Sweet Suite at The Dolls' Dome-ane on historic Chuckanut Drive

The Sweet Suite at The Dolls' Dome-ane on historic Chuckanut Drive
Bellingham
10.0 out of 10, Exceptional, (29 reviews)
"Charming property, comfy, clean and well appointed."
United States
Sara M.
The price is NZ$482
includes taxes & fees
1 Sept - 2 Sept
The Sweet Suite at The Dolls' Dome-ane on historic Chuckanut Drive

7. 900 square foot Studio loft in Fairhaven

900 square foot Studio loft in Fairhaven
South Bellingham
10.0 out of 10, Exceptional, (79 reviews)
"Lovely, comfortable and well appointed property. Hope to be back."
United States
Lori
The price is NZ$484
includes taxes & fees
7 Sept - 8 Sept
900 square foot Studio loft in Fairhaven

8. Downtown Bellingham Apartment

Downtown Bellingham Apartment
Lettered Streets
10.0 out of 10, Exceptional, (81 reviews)
"The apartment was very nice. Exceptionally clean and the beds were very comfortable. Nice coffee and tea station in the apartment and snacks were provided. The owners really think of everything that might be needed by guests."
United States
Ann
The price is NZ$335
includes taxes & fees
9 Sept - 10 Sept
Downtown Bellingham Apartment

9. Nestled across from beach, find a versatile studio.

Nestled across from beach, find a versatile studio.
Blaine
10.0 out of 10, Exceptional, (1 review)
"This place was perfect for my stay in Birch Bay / Blaine while I attended a workshop. There was plenty of kitchen ware, a nice Keurig machine, an induction plate, air fryer and toaster oven. I would happily stay here again!"
United States
Kathy M.
The price is NZ$331
includes taxes & fees
31 Aug - 1 Sept
Nestled across from beach, find a versatile studio.

10. Welcome to Tranquility Place, Whidbey Island

Welcome to Tranquility Place, Whidbey Island
Oak Harbor
9.8 out of 10, Exceptional, (14 reviews)
"We had a great stay! The bathroom is really nice and the view from the bed was lovely."
United States
Kerry K.
The price is NZ$317
includes taxes & fees
29 Sept - 30 Sept
Welcome to Tranquility Place, Whidbey Island

11. Walk-Everywhere Patio Suite with King Bed, Parking and Fenced Yard

Walk-Everywhere Patio Suite with King Bed, Parking and Fenced Yard
Sehome
10.0 out of 10, Exceptional, (18 reviews)
"Location is awesome, the hosts responsiveness and information sheet on local spots to eat was great. "
United States
Kate R.
The price is NZ$516
includes taxes & fees
2 Sept - 3 Sept
Walk-Everywhere Patio Suite with King Bed, Parking and Fenced Yard

12. Full Apt with large kitchen across the street from the beach.

Full Apt with large kitchen across the street from the beach.
Blaine
10.0 out of 10, Exceptional, (3 reviews)
"This is a very comfortable apartment with an amazingly stocked kitchen. Everything we needed was there. It is steps from the bay, and a quick walk to the state park. I would definitely stay here again!"
United States
Carla G.
The price is NZ$399
includes taxes & fees
8 Sept - 9 Sept
Full Apt with large kitchen across the street from the beach.

13. Studio with covered deck and Birch Bay View

Studio with covered deck and Birch Bay View
Blaine
7.6 out of 10, Good, (4 reviews)
"Great weather and great locatio6"
United States
michael c.
The price is NZ$351
includes taxes & fees
31 Aug - 1 Sept
Studio with covered deck and Birch Bay View

14. Creekside Studio- right across from the Beach.

Creekside Studio- right across from the Beach.
Birch Bay
9.8 out of 10, Exceptional, (18 reviews)
"The place was in tip top new condition. We enjoyed the nearby town of Blaine and the restaurants there. Took day trips to Mt Baker, Vancouver, and Friday Harbor in the San Juan Islands."
United States
James
The price is NZ$466
includes taxes & fees
30 Sept - 1 Oct
Creekside Studio- right across from the Beach.

15. Galbraith Mountain Forest Escape

Galbraith Mountain Forest Escape
Bellingham
10.0 out of 10, Exceptional, (21 reviews)
"Great experience!! We felt very taken care of and glad to stay. We will stay again next time."
United States
Eric F.
The price is NZ$820
includes taxes & fees
6 Sept - 7 Sept
Galbraith Mountain Forest Escape

16. Hobby Farm Hideaway: Quiet, Private Guest Suite with Yard in Ferndale, WA

Hobby Farm Hideaway: Quiet, Private Guest Suite with Yard in Ferndale, WA
Ferndale
8.8 out of 10, Excellent, (5 reviews)
"Cameron was super friendly and accommodating. The place was just what we needed for one night. It was private and well taken care of. Looking forward to coming back. "
United States
Josefine V.
The price is NZ$221
includes taxes & fees
16 Sept - 17 Sept
Hobby Farm Hideaway: Quiet, Private Guest Suite with Yard in Ferndale, WA

17. Upstairs at TheVictorian - Lush, Walkable, and Dog-Friendly Retreat - Steps from Downtown Bellingham

Upstairs at TheVictorian - Lush, Walkable, and Dog-Friendly Retreat - Steps from Downtown Bellingham
York
9.8 out of 10, Exceptional, (25 reviews)
"A sweet house with a great location. We enjoyed our stay!"
United States
Greg R.
The price is NZ$619
includes taxes & fees
29 Sept - 30 Sept
Upstairs at TheVictorian - Lush, Walkable, and Dog-Friendly Retreat - Steps from Downtown Bellingham

18. Luxury Maple Beach Waterfront King apartment-Ground Floor only 50 feet to Beach.

Luxury Maple Beach Waterfront King apartment-Ground Floor only 50 feet to Beach.
Point Roberts
10.0 out of 10, Exceptional, (12 reviews)
The price is NZ$334
includes taxes & fees
31 Aug - 1 Sept
Luxury Maple Beach Waterfront King apartment-Ground Floor only 50 feet to Beach.

19. Birch Bay over garage apartment

Birch Bay over garage apartment
Blaine
The price is NZ$385
includes taxes & fees
31 Aug - 1 Sept
Birch Bay over garage apartment

20. Upstairs at Thevictorian - Lush Walkable and Dog-friendly Retreat - Steps From Downtown Bellingham

Upstairs at Thevictorian - Lush Walkable and Dog-friendly Retreat - Steps From Downtown Bellingham
2.0 star property
York
10.0 out of 10, Exceptional, (1 review)
"Spotless"
United States
Henry
The price is NZ$630
includes taxes & fees
29 Sept - 30 Sept
Upstairs at Thevictorian - Lush Walkable and Dog-friendly Retreat - Steps From Downtown Bellingham
Lowest nightly price found within the past 24 hours based on a 1 night stay for 2 adults. Prices and availability subject to change. Additional terms may apply.
Save an average of 15% on thousands of hotels when you're signed in

Top San Juan Islands Hotel Reviews

Find out more about San Juan Islands

San Juan Islands Apartments information

Number of reviews
1
Accommodation
36 Apartments
Lowest Price
NZ$630
Highest Price
NZ$630

Explore a world of travel with Expedia