A lakeside lodge with a wooden pier, surrounded by lush greenery and a forested backdrop.

Spa Hotels & Resorts in San Juan Island from NZ$340

  • Change your mind

    Book hotels with free cancellation
  • Treat yourself

    Sign in to save 10% or more on thousands of hotels
    Sign in
  • Be picky

    Search almost a million properties worldwide

Check availability on San Juan Island Spa Hotels

Tonight
13 Sept - 14 Sept
Tomorrow
14 Sept - 15 Sept
Next weekend
18 Sept - 20 Sept
In two weeks
25 Sept - 27 Sept

Our top choices for San Juan Island hotels with a spa

1. Earthbox Inn & Spa

Earthbox Inn & Spa
Friday Harbor
  • Discover a serene spa sanctuary with 3 treatment rooms, a sauna, and spa pool nestled near the Whale Museum for ultimate relaxation.
NZ$438
includes taxes & fees
1 Oct - 2 Oct
Earthbox Inn & Spa

2. Roche Harbor Resort

Roche Harbor Resort
Friday Harbor
  • Serene waterfront resort offers hot stone massages, aromatherapy, and facials at full-service spa amid natural beauty.
NZ$427
includes taxes & fees
12 Oct - 13 Oct
Roche Harbor Resort

3. Lopez Islander Resort

Lopez Islander Resort
Lopez Island
  • Indulge in rejuvenating massage therapy and soak in the spa pool while enjoying stunning island views at this peaceful Lopez Island retreat.
NZ$340
includes taxes & fees
1 Oct - 2 Oct
Lopez Islander Resort
View all properties

Choose what matters most at spa hotels in San Juan Island

Pool
Breakfast included
Spa pool
4 stars
5 stars

Top San Juan Island Hotel Reviews

Coachman Inn & Suites

Coachman Inn & Suites

8/10 Good
"Pretty decent spot for the area. Will definitely stay again next time I’m in town"
Sara 2-night trip
Posted less than an hour ago
Coachman Inn & Suites
Friday Harbor Suites

Friday Harbor Suites

10/10 Excellent
"The suite was very clean and spacious. Staff was friendly and helpful. It in good location to stores and restaurants. We enjoyed our stay."
Lorena 2-night trip
Posted 5 hours ago
Friday Harbor Suites
Earthbox Inn & Spa

Earthbox Inn & Spa

10/10 Excellent
"Great place, good location. Peaceful grounds. Nice coffee shop in the courtyard. I would stay here again."
Amy 2-night trip
Posted 8 hours ago
Earthbox Inn & Spa
Roche Harbor Resort

Roche Harbor Resort

8/10 Good
"It’s a very old building so it’s expected that there are issues, but many of them are maintenance or replacement cycle issues. For instance the carpet is so old and dirty that it is actually wearing through in places. The room was clean and the bed and pillows were comfortable. The staff was very nice and helped make our first trip to Roche Harbor a pleasant experience."
Gregg 2-night trip
Posted 1 day ago
Roche Harbor Resort
Tucker House Inn

Tucker House Inn

10/10 Excellent
"Our stay was amazing! The staff is very responsive via the expedia messanger, quick check-in, super cozy room with stocked kitchen. The breakfast was great, including a to-go breakfast the day we departed - they thought of every detail. Nice location, little dog run area - I will be back!"
Paula 2-night trip
Posted 5 days ago
Tucker House Inn
Friday Harbor House

Friday Harbor House

8/10 Good
"The staff is not consistent. The restaurant greeter is not customer first. The large round table in the lobby means there’s literally nowhere to sit or congregate. Third floor has free coffee and sodas in the morning in the central area while there’s nothing on the main floor common area - for a very expensive room. Views are superb."
Heather 1-night trip
Posted 8 days ago
Friday Harbor House

Explore a world of travel with Expedia