Apartments in San Juan Island

    calendar shield illustration

    Change your mind

    Book hotels with free cancellation
    deals illustration

    Treat yourself

    Sign in to save 10% or more on thousands of hotels
    bed illustration

    Be picky

    Search almost a million properties worldwide

Check prices for these dates

Next weekend
In two weeks
In one month
In two months

Featured Apartments in San Juan Island

Studio Unit with Views of Hales Passage and Mt Baker

10.0 out of 10, Exceptional, (101)
"The bed was amazing and the property was spotless"
The price is NZ$283
includes taxes & fees
27 July - 28 July
Studio Unit with Views of Hales Passage and Mt Baker

Downtown Friday Harbor! Newly Built! (Shogun)

2.0 star property
9.2 out of 10, Wonderful, (9)
Downtown Friday Harbor! Newly Built! (Shogun)

Ocean view condo with balcony & peaceful location near Moran State Park

9.4 out of 10, Exceptional, (8)
"Loved the room, beds and the Island"
Ocean view condo with balcony & peaceful location near Moran State Park

Shared hot tub with meadow view

9.8 out of 10, Exceptional, (146)
"Loved everything about our stay! It even has a swing! A perfect reading "
Shared hot tub with meadow view

Home Away From Home… for you and for your pets!

8.8 out of 10, Excellent, (13)
"Wonderful host family..we will definitely stay again"
The price is NZ$665
includes taxes & fees
30 July - 31 July
Home Away From Home… for you and for your pets!

View * Harbor * Downtown * R & R!

2.0 star property
10.0 out of 10, Exceptional, (7)
"Plenty of room, great location, had everything we needed. Communication with hostess was great."
The price is NZ$440
includes taxes & fees
24 Aug - 25 Aug
View * Harbor * Downtown * R & R!

Downtown Friday Harbor! Newly Built! (CP)

2.0 star property
8.8 out of 10, Excellent, (13)
"We stayed at the Blue Water Inn for a girls’ trip, and we were pleasantly surprised. Management was wonderfully communicative. The property was clean, well-appointed, and comfortable, and the location was fabulous! We loved being able to walk around downtown and explore the harbor. "
Downtown Friday Harbor! Newly Built! (CP)

Dog-friendly studio w/ kitchenette, WiFi, yard & fire pit

9.2 out of 10, Wonderful, (71)
"Lovely place. Highly recommend!"
The price is NZ$521
includes taxes & fees
4 Aug - 5 Aug
Dog-friendly studio w/ kitchenette, WiFi, yard & fire pit

July Special! Experience Deer Harbor charm in our cozy 1-bedroom apartment

10.0 out of 10, Exceptional, (21)
"Place was nice and cozy good view and hosts were great to interact with will definitely book if in area again "
The price is NZ$554
includes taxes & fees
28 July - 29 July
July Special! Experience Deer Harbor charm in our cozy 1-bedroom apartment

Downtown Friday Harbor! Newly Built! (BL)

2.0 star property
7.0 out of 10, Good, (2)
"Rating Details: The property manager was more than helpful. The vacation rental was spotless. I was very happy with the location. I was more than satisfied with the condition of the vacation rental. Overall, I do not recommend this vacation rental. Reviewer Comments: The u it was new and clean. We just didn’t expect to sleep in a room without any windows or AC. Just a fan in the room. One night we slept with the door open to the common area where everyone walks down to the kitchen. That was...
Downtown Friday Harbor! Newly Built! (BL)

Similk Beach View Studio for two! Central HUB to San Juans and Skagit Valley!

9.8 out of 10, Exceptional, (6)
"Fantastic view of the beach and just everything you need to rest and relax."
Similk Beach View Studio for two! Central HUB to San Juans and Skagit Valley!

Downtown Friday Harbor! Newly Built! (HB)

2.0 star property
9.6 out of 10, Exceptional, (8)
"Rating Details: The vacation rental was very clean. I was very happy with the location. I was satisfied with the condition of the vacation rental. Overall, I recommend this vacation rental. Reviewer Comments: The property is new, quite nice, right in town. We didn’t have much luck getting the ROKU TV to work. Maybe it’s just an island situation, but in a town where the sidewalks roll up at 9pm, it would have been nice to be able to watch a movie. We also had an issue getting hot water in the...
Downtown Friday Harbor! Newly Built! (HB)

Deer Harbor Cottage on the Bluff

2.0 star property
Deer Harbor Cottage on the Bluff

View * W/D * Downtown * Harbor * R & R!

2.0 star property
9.6 out of 10, Exceptional, (4)
"OMG clean, delightful decor, everything you need, best host ever, cute property, absolutely will go here again!!!!!"
The price is NZ$450
includes taxes & fees
27 July - 28 July
View * W/D * Downtown * Harbor * R & R!

In-Law suite with mountain views, patio, jetted tub, & full kitchen

8.0 out of 10, Very good, (7)
"Peek a boo view of the water, quiet, comfortable and clean space. Woke up to amazing. Lots of wildlife, including deer, rabbits, and more birds than I’ve seen and heard in a long time! Close to Oak Harbor. Loved everything about this location and our stay."
In-Law suite with mountain views, patio, jetted tub, & full kitchen

Charming 2-bedroom bungalow with hot tub in Deer Harbor. Walk to the marina!

9.4 out of 10, Exceptional, (3)
"Beautiful."
Charming 2-bedroom bungalow with hot tub in Deer Harbor. Walk to the marina!

Downtown Friday Harbor! Newly Built! (MC)

2.0 star property
6.0 out of 10, (4)
"Great location. Hot, stuffy room. Clean, well-stocked kitchen. Water collecting on deck and not draining properly."
Downtown Friday Harbor! Newly Built! (MC)

Happy Valley Studio - Peaceful rest in nature, just 5 minutes from downtown!

10.0 out of 10, Exceptional, (12)
"Nice room and great location. We enjoyed our stay very much."
The price is NZ$253
includes taxes & fees
23 Aug - 24 Aug
Happy Valley Studio - Peaceful rest in nature, just 5 minutes from downtown!

Anacortes Condo ~ 1 Mi to Marina & Fidalgo Bay!

9.2 out of 10, Wonderful, (9)
"Cozy, clean, comfortable and private. We will definitely stay here again!"
Anacortes Condo ~ 1 Mi to Marina & Fidalgo Bay!

Sunset Suite in Deer Harbor

Sunset Suite in Deer Harbor
Lowest nightly price found within the past 24 hours based on a 1 night stay for 2 adults. Prices and availability subject to change. Additional terms may apply.
Save an average of 15% on thousands of hotels when you're signed in

Top San Juan Island Hotel Reviews