Mission Bay Hotels, San Diego

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Our top choices for Mission Bay hotels

Hyatt Regency Mission Bay Spa and Marina

Hyatt Regency Mission Bay Spa and Marina
4.0 star property
Mission Bay
8.4 out of 10, Very good, (1,594 reviews)
"Balcony view is awesome, clean room, staff at counter and restaurant service was stunning."
United States
francisco
The price is NZ$391
includes taxes & fees
5 Feb - 6 Feb
Hyatt Regency Mission Bay Spa and Marina

The Dana on Mission Bay

The Dana on Mission Bay
3.5 star property
Mission Bay
9.0 out of 10, Wonderful, (4,045 reviews)
"Great spot, great hotel, great food options!"
United States
Demes SP
The price is NZ$339
includes taxes & fees
22 Feb - 23 Feb
The Dana on Mission Bay

Paradise Point Resort & Spa

Paradise Point Resort & Spa
4.0 star property
Mission Bay
8.8 out of 10, Excellent, (2,385 reviews)
"Clean rooms, friendly staff, and a beautiful view all around.. "
United States
Morgan
The price is NZ$359
includes taxes & fees
1 Mar - 2 Mar
Paradise Point Resort & Spa

San Diego Mission Bay Resort

San Diego Mission Bay Resort
4.0 star property
Mission Bay
8.4 out of 10, Very good, (1,340 reviews)
"Great place for our family getaway! Loved the S’mores on the beach! "
United States
Dani
The price is NZ$435
includes taxes & fees
22 Feb - 23 Feb
San Diego Mission Bay Resort

Wyndham San Diego Bayside

Wyndham San Diego Bayside
4.0 star property
8 km from Mission Bay
8.4 out of 10, Very good, (6,023 reviews)
"Great place to stay"
United States
David
The price is NZ$348
includes taxes & fees
1 Mar - 2 Mar
Wyndham San Diego Bayside

The DEXTRO Little Italy, BW Premier Collection

The DEXTRO Little Italy, BW Premier Collection
3.0 star property
8.2 km from Mission Bay
9.0 out of 10, Wonderful, (988 reviews)
"Clean rooms and friendly staff"
United States
Topeka
The price is NZ$221
includes taxes & fees
22 Feb - 23 Feb
The DEXTRO Little Italy, BW Premier Collection

Bay Club Hotel & Marina

Bay Club Hotel & Marina
3.5 star property
6.8 km from Mission Bay
9.2 out of 10, Wonderful, (3,342 reviews)
"We had great time and enjoyed our stay "
United States
sadra
The price is NZ$239
includes taxes & fees
24 Feb - 25 Feb
Bay Club Hotel & Marina

Days Inn by Wyndham San Diego Hotel Circle

Days Inn by Wyndham San Diego Hotel Circle
3.0 star property
5.5 km from Mission Bay
8.0 out of 10, Very good, (2,451 reviews)
"Very easy to check in and check out, room was clean and location was fantastic. "
United States
Melissa
The price is NZ$151
includes taxes & fees
24 Feb - 25 Feb
Days Inn by Wyndham San Diego Hotel Circle

Holiday Inn Express San Diego Downtown by IHG

Holiday Inn Express San Diego Downtown by IHG
2.5 star property
8.7 km from Mission Bay
8.4 out of 10, Very good, (1,598 reviews)
"Very clean will stay there again"
United States
Ricardo
The price is NZ$260
includes taxes & fees
1 Mar - 2 Mar
Holiday Inn Express San Diego Downtown by IHG

DoubleTree by Hilton San Diego - Del Mar

DoubleTree by Hilton San Diego - Del Mar
4.0 star property
Carmel Valley, 17.8 km from Mission Bay
8.4 out of 10, Very good, (2,014 reviews)
"Nice hotel, staff is great."
United States
Felipe Ramirez
The price is NZ$244
includes taxes & fees
8 Feb - 9 Feb
DoubleTree by Hilton San Diego - Del Mar

Hampton Inn & Suites San Diego Airport Liberty Station

Hampton Inn & Suites San Diego Airport Liberty Station
2.5 star property
5.3 km from Mission Bay
9.2 out of 10, Wonderful, (1,717 reviews)
"Great place to stay for access to the airport, staff was super!"
Canada
Alison
The price is NZ$323
includes taxes & fees
7 Feb - 8 Feb
Hampton Inn & Suites San Diego Airport Liberty Station

Hard Rock Hotel San Diego

Hard Rock Hotel San Diego
4.0 star property
Gaslamp Quarter, 9.7 km from Mission Bay
9.0 out of 10, Wonderful, (3,278 reviews)
"Great place to stay!"
United States
CINDY
The price is NZ$490
includes taxes & fees
21 Feb - 22 Feb
Hard Rock Hotel San Diego

Staypineapple, Hotel Z, Gaslamp San Diego

Staypineapple, Hotel Z, Gaslamp San Diego
3.0 star property
Gaslamp Quarter, 9.4 km from Mission Bay
9.4 out of 10, Exceptional, (1,002 reviews)
"Great location and stay. "
United States
Simran
The price is NZ$247
includes taxes & fees
16 Feb - 17 Feb
Staypineapple, Hotel Z, Gaslamp San Diego

Embassy Suites by Hilton San Diego Bay Downtown

Embassy Suites by Hilton San Diego Bay Downtown
4.0 star property
8.7 km from Mission Bay
9.0 out of 10, Wonderful, (1,603 reviews)
"Very easy vacation, convenient breakfast as well as location."
United States
Kathy
The price is NZ$390
includes taxes & fees
1 Mar - 2 Mar
Embassy Suites by Hilton San Diego Bay Downtown

Kings Inn San Diego

Kings Inn San Diego
2.5 star property
4.9 km from Mission Bay
8.8 out of 10, Excellent, (3,621 reviews)
"Love the Kings Inn, always on our travel list!!"
United States
Linzee
The price is NZ$137
includes taxes & fees
2 Feb - 3 Feb
Kings Inn San Diego

The Sofia Hotel

The Sofia Hotel
3.5 star property
8.7 km from Mission Bay
8.6 out of 10, Excellent, (1,733 reviews)
"Great hotel "
United States
Alexander
The Sofia Hotel

Best Western Plus Island Palms Hotel & Marina

Best Western Plus Island Palms Hotel & Marina
3.0 star property
7 km from Mission Bay
8.8 out of 10, Excellent, (1,573 reviews)
"Great place.very clean great for family would definitely stay there again."
United States
Joseph
The price is NZ$258
includes taxes & fees
22 Feb - 23 Feb
Best Western Plus Island Palms Hotel & Marina

Comfort Inn San Diego Old Town

Comfort Inn San Diego Old Town
2.5 star property
Old Town San Diego, 4 km from Mission Bay
8.2 out of 10, Very good, (1,950 reviews)
"Rooms are very clean, workers were very friendly. Will definitely stay there again "
United States
Claudia
The price is NZ$194
includes taxes & fees
16 Feb - 17 Feb
Comfort Inn San Diego Old Town

Country Inn & Suites by Radisson, San Diego North, CA

Country Inn & Suites by Radisson, San Diego North, CA
3.0 star property
13.8 km from Mission Bay
9.0 out of 10, Wonderful, (1,414 reviews)
"Good rooms and convenient location "
United States
Saroop
The price is NZ$258
includes taxes & fees
7 Feb - 8 Feb
Country Inn & Suites by Radisson, San Diego North, CA

GreenTree Inn San Diego Mission Bay

GreenTree Inn San Diego Mission Bay
2.5 star property
Pacific Beach, 3 km from Mission Bay
8.0 out of 10, Very good, (1,918 reviews)
"The staff was very nice and great location"
United States
Curtis
The price is NZ$168
includes taxes & fees
4 Feb - 5 Feb
GreenTree Inn San Diego Mission Bay
Lowest nightly price found within the past 24 hours based on a 1 night stay for 2 adults. Prices and availability subject to change. Additional terms may apply.

Our guide on where to stay in Mission Bay

Find the best Mission Bay areas for the activities you enjoy most.

Downtown San Diego

Known for its fantastic nightlife, fascinating museums and beautiful waterfront views, there's plenty to explore in Downtown San Diego. Top attractions like Petco Park and Port of San Diego are major draws. Catch the metro at Civic Center Station or Civic Center Station to see more of the city.

Mission Beach

If you're spending some time in Mission Beach, Mission Bay and Mission Beach are top sights worth seeing.

Pacific Beach

Relax in beachside cafés in the morning, surf clean breaks in the afternoon and dance with a youthful club crowd at night at this coastal San Diego strip.

Gaslamp Quarter

The historic heart of San Diego has a fascinating history, and today is a thriving hub for food, retail and entertainment.

Ocean Beach

Ocean Beach is beloved for its stunning beaches. Take some time to explore sights in the area like Dog Beach and Ocean Beach Farmers Market.

Top Mission Bay Hotel Reviews

Frequently asked questions

What is Mission Bay like?
You'll be sure to have fun exploring San Diego's Mission Bay neighbourhood. Looking for sights you might find in a travel guide about Mission Bay? Consider a visit to Mission Bay while you're in the neighbourhood.
What's a favourite hotel to stay in Mission Bay?
Based on Expedia customer reviews, Paradise Point Resort & Spa is the highest ranked property in Mission Bay. This resort offers a marina and 5 outdoor pools. Other favourite options in the area include The Dana on Mission Bay and San Diego Mission Bay Resort.
How many hotels should I expect to find in the Mission Bay area?
If you're searching for places to stay in San Diego, Expedia has something to meet your needs with 46 Mission Bay hotels and other accommodation options to choose from.
If I need to cancel my hotel reservation in Mission Bay, will I receive a refund?
Yes, you'll find most room reservations are refundable provided that you cancel before the accommodation's cancellation deadline, which is usually within 24-48 hours of the scheduled arrival. If you booked a non-refundable reservation, you might be able to still cancel and be given a refund within a 24-hour period of your booking. Add your dates and click on "Search", then you can use the "fully refundable" filter to view top deals in Mission Bay.
What is there to do around this San Diego neighbourhood?
Enjoy a stroll along the shore at Mission and Pacific Beaches, Ski Beach and Crown Point Shores while you're in Mission Bay. You could also plan a visit to Mission Bay or Mission Bay Golf Course while you're in the neighbourhood. Mission Beach, North Cove Beach and Bahia Point Beach are just a few of the places to visit in and around Mission Bay. When you're sightseeing in San Diego, Bay City Brewing Co. and Sail Bay are also worth a stop.