An aerial view of a coastal city with a marina, a large body of water, and a peninsula with buildings.

Mission Bay Hotels, San Diego

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Our top choices for Mission Bay hotels

1. San Diego Mission Bay Resort

San Diego Mission Bay Resort
4.0 star property
Mission Bay
8.6 out of 10, Excellent, (1,563 reviews)
"Great location, very clean and lots to do around the area!"
United States
Terri
The price is NZ$497
includes taxes & fees
7 Sept - 8 Sept
San Diego Mission Bay Resort

2. The Dana on Mission Bay

The Dana on Mission Bay
3.5 star property
Mission Bay
9.0 out of 10, Wonderful, (4,442 reviews)
"Great stay"
United States
Loretta
The price is NZ$417
includes taxes & fees
7 Sept - 8 Sept
The Dana on Mission Bay

3. Hyatt Regency Mission Bay Spa and Marina

Hyatt Regency Mission Bay Spa and Marina
4.0 star property
Mission Bay
8.4 out of 10, Very good, (1,639 reviews)
"We absolutely loved this hotel and will definitely revisit!"
United States
Casey
The price is NZ$466
includes taxes & fees
2 Sept - 3 Sept
Hyatt Regency Mission Bay Spa and Marina

4. Paradise Point Resort & Spa

Paradise Point Resort & Spa
4.0 star property
Mission Bay
8.8 out of 10, Excellent, (2,812 reviews)
"great location and great dining options"
United States
Beatrice A
The price is NZ$525
includes taxes & fees
7 Sept - 8 Sept
Paradise Point Resort & Spa

5. Wyndham Garden San Diego Near SeaWorld

Wyndham Garden San Diego Near SeaWorld
3.0 star property
2.6 km from Mission Bay
7.4 out of 10, Good, (4,176 reviews)
"It was a good stay for the price!"
United States
marissa
The price is NZ$245
includes taxes & fees
30 Aug - 31 Aug
Wyndham Garden San Diego Near SeaWorld

6. Holiday Inn Express San Diego - SeaWorld Area by IHG

Holiday Inn Express San Diego - SeaWorld Area by IHG
2.5 star property
2.3 km from Mission Bay
8.8 out of 10, Excellent, (1,017 reviews)
"Clean room, great staff and good breakfast"
United States
Leslie
The price is NZ$295
includes taxes & fees
7 Sept - 8 Sept
Holiday Inn Express San Diego - SeaWorld Area by IHG

7. Hilton Garden Inn San Diego Old Town/SeaWorld Area

Hilton Garden Inn San Diego Old Town/SeaWorld Area
3.0 star property
Old Town San Diego, 3.1 km from Mission Bay
8.8 out of 10, Excellent, (1,492 reviews)
"Loved the stay the staff were amazing!"
United States
Cari
The price is NZ$232
includes taxes & fees
23 Aug - 24 Aug
Hilton Garden Inn San Diego Old Town/SeaWorld Area

8. Comfort Inn Sea World Area

Comfort Inn Sea World Area
3.5 star property
2.9 km from Mission Bay
8.6 out of 10, Excellent, (3,984 reviews)
"Room was clean, staff was friendly"
United States
Ronald
The price is NZ$216
includes taxes & fees
8 Sept - 9 Sept
Comfort Inn Sea World Area

9. Old Town Inn

Old Town Inn
2.5 star property
3.5 km from Mission Bay
9.0 out of 10, Wonderful, (1,924 reviews)
"Well kept, great location and would definitely recommend and stay again!"
United States
Jennifer
The price is NZ$281
includes taxes & fees
26 Aug - 27 Aug
Old Town Inn

10. Hampton Inn & Suites by Hilton San Diego SeaWorld Near Old Town

Hampton Inn & Suites by Hilton San Diego SeaWorld Near Old Town
4.0 star property
2.8 km from Mission Bay
9.2 out of 10, Wonderful, (1,186 reviews)
"Nice and safe place to stay"
United States
Dominador
The price is NZ$302
includes taxes & fees
7 Sept - 8 Sept
Hampton Inn & Suites by Hilton San Diego SeaWorld Near Old Town

11. GreenTree Inn San Diego Mission Bay

GreenTree Inn San Diego Mission Bay
2.5 star property
Pacific Beach, 3 km from Mission Bay
8.0 out of 10, Very good, (2,307 reviews)
"Perfect for a family vacation, close to Sea World and places to visit around it."
United States
Alma
The price is NZ$198
includes taxes & fees
8 Sept - 9 Sept
GreenTree Inn San Diego Mission Bay

12. Hampton Inn San Diego/Mission Valley

Hampton Inn San Diego/Mission Valley
2.5 star property
4.3 km from Mission Bay
8.6 out of 10, Excellent, (1,689 reviews)
"Great hotel!"
United States
Julie
The price is NZ$254
includes taxes & fees
23 Aug - 24 Aug
Hampton Inn San Diego/Mission Valley

13. Best Western Plus Hacienda Hotel Old Town

Best Western Plus Hacienda Hotel Old Town
3.0 star property
Old Town San Diego, 3.7 km from Mission Bay
8.4 out of 10, Very good, (2,105 reviews)
"Pool and view, close to old town."
United States
Fernando
The price is NZ$279
includes taxes & fees
24 Aug - 25 Aug
Best Western Plus Hacienda Hotel Old Town

14. Hampton Inn & Suites San Diego Airport Liberty Station

Hampton Inn & Suites San Diego Airport Liberty Station
2.5 star property
5.3 km from Mission Bay
9.2 out of 10, Wonderful, (1,713 reviews)
"Very nice hotel, close to the SD Airport."
Mexico
Brenda
The price is NZ$326
includes taxes & fees
31 Aug - 1 Sept
Hampton Inn & Suites San Diego Airport Liberty Station

15. Courtyard by Marriott Old Town

Courtyard by Marriott Old Town
3.0 star property
Old Town San Diego, 3.9 km from Mission Bay
8.8 out of 10, Excellent, (1,001 reviews)
"Always enjoy our stay so convenient!"
United States
Carmen
The price is NZ$281
includes taxes & fees
6 Sept - 7 Sept
Courtyard by Marriott Old Town

16. Holiday Inn Express San Diego Airport - Old Town by IHG

Holiday Inn Express San Diego Airport - Old Town by IHG
2.5 star property
4.8 km from Mission Bay
9.2 out of 10, Wonderful, (1,089 reviews)
"Very good hotel at the price with good choice of breakfast."
United States
Tirthankar
The price is NZ$266
includes taxes & fees
1 Sept - 2 Sept
Holiday Inn Express San Diego Airport - Old Town by IHG

17. Sheraton San Diego Resort

Sheraton San Diego Resort
4.0 star property
6 km from Mission Bay
8.4 out of 10, Very good, (3,648 reviews)
"Perfect hotel for family fun."
United States
Andre
The price is NZ$330
includes taxes & fees
7 Sept - 8 Sept
Sheraton San Diego Resort

18. Comfort Inn San Diego Old Town

Comfort Inn San Diego Old Town
2.5 star property
Old Town San Diego, 4 km from Mission Bay
8.2 out of 10, Very good, (2,052 reviews)
"Was a great stay. Would stay again."
United States
Terri
The price is NZ$217
includes taxes & fees
30 Aug - 31 Aug
Comfort Inn San Diego Old Town

19. Heritage Inn San Diego

Heritage Inn San Diego
2.0 star property
2.2 km from Mission Bay
7.2 out of 10, Good, (1,807 reviews)
"Great stay!"
United States
Ivan
The price is NZ$129
includes taxes & fees
3 Sept - 4 Sept
Heritage Inn San Diego

20. Crowne Plaza San Diego - Mission Valley by IHG

Crowne Plaza San Diego - Mission Valley by IHG
3.5 star property
4 km from Mission Bay
8.4 out of 10, Very good, (1,164 reviews)
"Great property and comfortable bed with the best pillows."
United States
Tom
The price is NZ$240
includes taxes & fees
24 Aug - 25 Aug
Crowne Plaza San Diego - Mission Valley by IHG
Lowest nightly price found within the past 24 hours based on a 1 night stay for 2 adults. Prices and availability subject to change. Additional terms may apply.

Our guide on where to stay in Mission Bay

Find the best Mission Bay areas for the activities you enjoy most.

Downtown San Diego

Known for its fantastic nightlife, fascinating museums and beautiful waterfront views, there's plenty to explore in Downtown San Diego. Top attractions like Petco Park and Port of San Diego are major draws. Catch the metro at Civic Center Station or Civic Center Station to see more of the city.

Pacific Beach

Relax in beachside cafés in the morning, surf clean breaks in the afternoon and dance with a youthful club crowd at night at this coastal San Diego strip.

Mission Beach

If you're spending some time in Mission Beach, Mission Beach and Mission Bay are top sights worth seeing.

Gaslamp Quarter

The historic heart of San Diego has a fascinating history, and today is a thriving hub for food, retail and entertainment.

Ocean Beach

Ocean Beach is beloved for its stunning beaches. Take some time to explore sights in the area like Ocean Beach and Dog Beach.

Top Mission Bay Hotel Reviews

Recent Reviews in Mission Bay

Frequently asked questions

What is Mission Bay like?
You'll be sure to have fun exploring San Diego's Mission Bay neighbourhood. Looking for sights you might find in a travel guide about Mission Bay? Consider a visit to Mission Bay while you're in the neighbourhood.
What's a favourite hotel to stay in Mission Bay?
Based on our traveller data, Paradise Point Resort & Spa is one of the top choices for your stay in Mission Bay. This resort is a short 1-minute walk from Mission Bay, and it offers a marina and 5 outdoor pools. Other good options for your stay in the neighbourhood include The Dana on Mission Bay and Hyatt Regency Mission Bay Spa and Marina.
How many hotels should I expect to find in the Mission Bay area?
If you're searching for places to stay in San Diego, Expedia has something to meet your needs with 46 Mission Bay hotels and other accommodation options to choose from.
If I need to cancel my hotel reservation in Mission Bay, will I receive a refund?
Yes, you'll find most room reservations are refundable provided that you cancel before the accommodation's cancellation deadline, which is usually within 24-48 hours of the scheduled arrival. If you booked a non-refundable reservation, you might be able to still cancel and be given a refund within a 24-hour period of your booking. Add your dates and click on "Search", then you can use the "fully refundable" filter to view top deals in Mission Bay.
What is there to do around this San Diego neighbourhood?
Dip your toes in the water at Ski Beach or Mission and Pacific Beaches while you're in Mission Bay. You could also plan a visit to Mission Bay or The Dana On Mission Bay, BW Premier Collection while you're in the neighbourhood. Don't miss favourite places to visit in the surrounding area, such as Mission Beach, Marine Corps Recruit Depot and Hotel Circle. When you're sightseeing in San Diego, Crown Point Shores and North Cove Beach are also worth a stop.