An aerial view of a coastal city with a marina, a large body of water, and a peninsula with buildings.

Mission Bay Hotels, San Diego

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Our top choices for Mission Bay hotels

San Diego Mission Bay Resort

San Diego Mission Bay Resort
4.0 star property
Mission Bay
8.6 out of 10, Excellent, (1,496 reviews)
"We have stayed here before, good location, clean rooms, great staff."
United States
Lance
The price is NZ$694
includes taxes & fees
6 July - 7 July
San Diego Mission Bay Resort

Paradise Point Resort & Spa

Paradise Point Resort & Spa
4.0 star property
Mission Bay
8.8 out of 10, Excellent, (2,661 reviews)
"This was a beautiful place to stay. Right by the water, staff was very helpful, restaurant's were good"
United States
Myesha
The price is NZ$654
includes taxes & fees
28 June - 29 June
Paradise Point Resort & Spa

The Dana on Mission Bay

The Dana on Mission Bay
3.5 star property
Mission Bay
9.0 out of 10, Wonderful, (4,374 reviews)
"Beautiful property, very helpful staff, great location"
United States
Jamie
The price is NZ$571
includes taxes & fees
29 June - 30 June
The Dana on Mission Bay

Hyatt Regency Mission Bay Spa and Marina

Hyatt Regency Mission Bay Spa and Marina
4.0 star property
Mission Bay
8.4 out of 10, Very good, (1,632 reviews)
"Amazing place!"
United States
Yesenia
The price is NZ$654
includes taxes & fees
28 June - 29 June
Hyatt Regency Mission Bay Spa and Marina

Valli Hi Motel

Valli Hi Motel
2.5 star property
28.8 km from Mission Bay
8.4 out of 10, Very good, (1,021 reviews)
"Great place to stay."
United States
Allan
The price is NZ$170
includes taxes & fees
29 June - 30 June
Valli Hi Motel

La Quinta Inn by Wyndham San Diego - Miramar

La Quinta Inn by Wyndham San Diego - Miramar
3.0 star property
22.2 km from Mission Bay
8.0 out of 10, Very good, (1,321 reviews)
"Clean rooms, helpful staff and great breakfast."
United States
isabel
The price is NZ$255
includes taxes & fees
5 July - 6 July
La Quinta Inn by Wyndham San Diego - Miramar

Best Western Plus Marina Gateway Hotel

Best Western Plus Marina Gateway Hotel
3.5 star property
16.7 km from Mission Bay
9.2 out of 10, Wonderful, (3,891 reviews)
"Great stay"
United States
Cameron
The price is NZ$328
includes taxes & fees
30 June - 1 July
Best Western Plus Marina Gateway Hotel

Ayres Hotel San Diego South - Chula Vista

Ayres Hotel San Diego South - Chula Vista
3.0 star property
29.6 km from Mission Bay
9.8 out of 10, Exceptional, (1,098 reviews)
"Nice place good food for breakfast 👍"
United States
Paul
The price is NZ$408
includes taxes & fees
19 July - 20 July
Ayres Hotel San Diego South - Chula Vista

Hampton Inn & Suites San Diego Airport Liberty Station

Hampton Inn & Suites San Diego Airport Liberty Station
2.5 star property
5.3 km from Mission Bay
9.2 out of 10, Wonderful, (1,714 reviews)
"Good location, clean room and nice staff. A great place to stay."
United States
Patricia
The price is NZ$343
includes taxes & fees
1 July - 2 July
Hampton Inn & Suites San Diego Airport Liberty Station

Embassy Suites by Hilton San Diego La Jolla

Embassy Suites by Hilton San Diego La Jolla
4.0 star property
University City, 11 km from Mission Bay
8.8 out of 10, Excellent, (1,941 reviews)
"Great location and very comfortable and spacious hotel room"
United States
Carmen
The price is NZ$458
includes taxes & fees
9 July - 10 July
Embassy Suites by Hilton San Diego La Jolla

Best Western Americana Inn

Best Western Americana Inn
2.5 star property
28.6 km from Mission Bay
8.8 out of 10, Excellent, (1,309 reviews)
"The breakfast was great, the staff was helpful, and the room was clean and spacious!"
United States
Christopher
The price is NZ$242
includes taxes & fees
12 July - 13 July
Best Western Americana Inn

Days Inn by Wyndham San Diego-East/El Cajon

Days Inn by Wyndham San Diego-East/El Cajon
2.0 star property
25.7 km from Mission Bay
7.8 out of 10, Good, (1,011 reviews)
"Rooms were cheap clean property was clean convenient close to where I was working"
United States
James
The price is NZ$195
includes taxes & fees
28 June - 29 June
Days Inn by Wyndham San Diego-East/El Cajon

Comfort Inn Chula Vista San Diego South

Comfort Inn Chula Vista San Diego South
2.5 star property
20.6 km from Mission Bay
8.2 out of 10, Very good, (1,563 reviews)
"The room was comfortable and conveniently located. Breakfast was great for the cost of our stay."
United States
Arsenia P
The price is NZ$259
includes taxes & fees
5 July - 6 July
Comfort Inn Chula Vista San Diego South

Heritage Inn La Mesa

Heritage Inn La Mesa
2.0 star property
18.2 km from Mission Bay
7.0 out of 10, Good, (1,497 reviews)
"Very clean, quiet and safe!!!"
United States
Roy
The price is NZ$138
includes taxes & fees
29 June - 30 June
Heritage Inn La Mesa

California Suites Hotel

California Suites Hotel
2.0 star property
7.8 km from Mission Bay
7.8 out of 10, Good, (2,661 reviews)
"Really great hotel for the price. We will definitely be staying here again with our little ones"
United States
Cristina
The price is NZ$216
includes taxes & fees
28 June - 29 June
California Suites Hotel

SpringHill Suites by Marriott San Diego Rancho Bernardo/Scripps Poway

SpringHill Suites by Marriott San Diego Rancho Bernardo/Scripps Poway
3.0 star property
20.8 km from Mission Bay
8.8 out of 10, Excellent, (1,219 reviews)
"Clean room, a good breakfast and aa safe palce to stay in with kids"
United States
Lorenz
The price is NZ$399
includes taxes & fees
2 July - 3 July
SpringHill Suites by Marriott San Diego Rancho Bernardo/Scripps Poway

Old Town Inn

Old Town Inn
2.5 star property
3.5 km from Mission Bay
9.2 out of 10, Wonderful, (1,882 reviews)
"Clean room, good breakfast, comfortable pool area, friendly staff."
United States
Robert
The price is NZ$335
includes taxes & fees
29 June - 30 June
Old Town Inn

Wyndham Garden San Diego Near SeaWorld

Wyndham Garden San Diego Near SeaWorld
3.0 star property
2.6 km from Mission Bay
7.4 out of 10, Good, (4,200 reviews)
"Clean room, staff was very helpful, parking was easy and accessible!"
United States
Hector
The price is NZ$256
includes taxes & fees
29 June - 30 June
Wyndham Garden San Diego Near SeaWorld

Sheraton San Diego Resort

Sheraton San Diego Resort
4.0 star property
6 km from Mission Bay
8.4 out of 10, Very good, (3,529 reviews)
"Great location and shuttle service to and from the airport."
Canada
Malinda
The price is NZ$409
includes taxes & fees
1 July - 2 July
Sheraton San Diego Resort

Heritage Inn San Diego

Heritage Inn San Diego
2.0 star property
2.2 km from Mission Bay
7.2 out of 10, Good, (1,553 reviews)
"Great stay"
United States
Alyssa
The price is NZ$146
includes taxes & fees
28 June - 29 June
Heritage Inn San Diego
Lowest nightly price found within the past 24 hours based on a 1 night stay for 2 adults. Prices and availability subject to change. Additional terms may apply.

Our guide on where to stay in Mission Bay

Find the best Mission Bay areas for the activities you enjoy most.

Downtown San Diego

Known for its fantastic nightlife, fascinating museums and beautiful waterfront views, there's plenty to explore in Downtown San Diego. Top attractions like Petco Park and Port of San Diego are major draws. Catch the metro at Civic Center Station or Civic Center Station to see more of the city.

Pacific Beach

Relax in beachside cafés in the morning, surf clean breaks in the afternoon and dance with a youthful club crowd at night at this coastal San Diego strip.

Mission Beach

If you're spending some time in Mission Beach, Mission Beach and Mission Bay are top sights worth seeing.

Gaslamp Quarter

The historic heart of San Diego has a fascinating history, and today is a thriving hub for food, retail and entertainment.

Ocean Beach

Ocean Beach is beloved for its stunning beaches. Take some time to explore sights in the area like Ocean Beach and Dog Beach.

Top Mission Bay Hotel Reviews

Frequently asked questions

What is Mission Bay like?
You'll be sure to have fun exploring San Diego's Mission Bay neighbourhood. Looking for sights you might find in a travel guide about Mission Bay? Consider a visit to Mission Bay while you're in the neighbourhood.
What's a favourite hotel to stay in Mission Bay?
Based on our traveller data, San Diego Mission Bay Resort is one of the top choices for your stay in Mission Bay. This resort offers a full-service spa and 2 restaurants. Other good options for your stay in the neighbourhood include Paradise Point Resort & Spa and The Dana on Mission Bay.
How many hotels should I expect to find in the Mission Bay area?
If you're searching for places to stay in San Diego, Expedia has something to meet your needs with 46 Mission Bay hotels and other accommodation options to choose from.
If I need to cancel my hotel reservation in Mission Bay, will I receive a refund?
Yes, you'll find most room reservations are refundable provided that you cancel before the accommodation's cancellation deadline, which is usually within 24-48 hours of the scheduled arrival. If you booked a non-refundable reservation, you might be able to still cancel and be given a refund within a 24-hour period of your booking. Add your dates and click on "Search", then you can use the "fully refundable" filter to view top deals in Mission Bay.
What is there to do around this San Diego neighbourhood?
Enjoy a stroll along the shore at Mission and Pacific Beaches, Ski Beach and Crown Point Shores while you're in Mission Bay. You could also plan a visit to Mission Bay or North Cove Beach while you're in the neighbourhood. Mission Beach and Hotel Circle are some popular places to visit in the area around Mission Bay. When you're sightseeing in San Diego, The Dana On Mission Bay, BW Premier Collection and Marina Village Conference Center are also worth a stop.