Mission Bay Hotels, San Diego

  • Change your mind

    Book hotels with free cancellation
  • Treat yourself

    Sign in to save 10% or more on thousands of hotels
  • Be picky

    Search almost a million properties worldwide

Check prices for these dates

Next weekend
In two weeks

Filter by

Guest rating
Guest rating
Star rating

Our top choices for Mission Bay hotels

Hyatt Regency Mission Bay Spa and Marina

Hyatt Regency Mission Bay Spa and Marina
4.0 star property
Mission Bay
8.4 out of 10, Very good, (1,594 reviews)
"Balcony view is awesome, clean room, staff at counter and restaurant service was stunning."
United States
francisco
The price is NZ$391
includes taxes & fees
5 Feb - 6 Feb
Hyatt Regency Mission Bay Spa and Marina

Paradise Point Resort & Spa

Paradise Point Resort & Spa
4.0 star property
Mission Bay
8.8 out of 10, Excellent, (2,385 reviews)
"Clean rooms, friendly staff, and a beautiful view all around.. "
United States
Morgan
The price is NZ$359
includes taxes & fees
1 Mar - 2 Mar
Paradise Point Resort & Spa

The Dana on Mission Bay

The Dana on Mission Bay
3.5 star property
Mission Bay
9.0 out of 10, Wonderful, (4,045 reviews)
"Great spot, great hotel, great food options!"
United States
Demes SP
The price is NZ$339
includes taxes & fees
22 Feb - 23 Feb
The Dana on Mission Bay

San Diego Mission Bay Resort

San Diego Mission Bay Resort
4.0 star property
Mission Bay
8.4 out of 10, Very good, (1,340 reviews)
"Great place for our family getaway! Loved the S’mores on the beach! "
United States
Dani
The price is NZ$435
includes taxes & fees
22 Feb - 23 Feb
San Diego Mission Bay Resort

The DEXTRO Little Italy, BW Premier Collection

The DEXTRO Little Italy, BW Premier Collection
3.0 star property
8.2 km from Mission Bay
9.0 out of 10, Wonderful, (988 reviews)
"Clean rooms and friendly staff"
United States
Topeka
The price is NZ$221
includes taxes & fees
22 Feb - 23 Feb
The DEXTRO Little Italy, BW Premier Collection

Wyndham San Diego Bayside

Wyndham San Diego Bayside
4.0 star property
8 km from Mission Bay
8.4 out of 10, Very good, (6,023 reviews)
"Great place to stay"
United States
David
The price is NZ$348
includes taxes & fees
1 Mar - 2 Mar
Wyndham San Diego Bayside

Bay Club Hotel & Marina

Bay Club Hotel & Marina
3.5 star property
6.8 km from Mission Bay
9.2 out of 10, Wonderful, (3,342 reviews)
"We had great time and enjoyed our stay "
United States
sadra
The price is NZ$239
includes taxes & fees
24 Feb - 25 Feb
Bay Club Hotel & Marina

Days Inn by Wyndham San Diego Hotel Circle

Days Inn by Wyndham San Diego Hotel Circle
3.0 star property
5.5 km from Mission Bay
8.0 out of 10, Very good, (2,451 reviews)
"Very easy to check in and check out, room was clean and location was fantastic. "
United States
Melissa
The price is NZ$151
includes taxes & fees
24 Feb - 25 Feb
Days Inn by Wyndham San Diego Hotel Circle

Staypineapple, Hotel Z, Gaslamp San Diego

Staypineapple, Hotel Z, Gaslamp San Diego
3.0 star property
Gaslamp Quarter, 9.4 km from Mission Bay
9.4 out of 10, Exceptional, (1,002 reviews)
"Great location and stay. "
United States
Simran
The price is NZ$247
includes taxes & fees
16 Feb - 17 Feb
Staypineapple, Hotel Z, Gaslamp San Diego

Best Western San Diego/Miramar Hotel

Best Western San Diego/Miramar Hotel
2.5 star property
16.1 km from Mission Bay
7.8 out of 10, Good, (1,178 reviews)
"Great hotel. "
United States
Sharl
The price is NZ$161
includes taxes & fees
22 Feb - 23 Feb
Best Western San Diego/Miramar Hotel

Wyndham Garden San Diego Near SeaWorld

Wyndham Garden San Diego Near SeaWorld
3.0 star property
2.6 km from Mission Bay
7.4 out of 10, Good, (4,156 reviews)
"Good location friendly staff"
United States
Anya
The price is NZ$178
includes taxes & fees
22 Feb - 23 Feb
Wyndham Garden San Diego Near SeaWorld

Kings Inn San Diego

Kings Inn San Diego
2.5 star property
4.9 km from Mission Bay
8.8 out of 10, Excellent, (3,621 reviews)
"Love the Kings Inn, always on our travel list!!"
United States
Linzee
The price is NZ$137
includes taxes & fees
2 Feb - 3 Feb
Kings Inn San Diego

The Encinitan Hotel & Suites

The Encinitan Hotel & Suites
3.0 star property
30.9 km from Mission Bay
8.2 out of 10, Very good, (1,355 reviews)
"Perfect location with great value. We always like to visit this hotel."
United States
todd
The Encinitan Hotel & Suites

GreenTree Inn San Diego Mission Bay

GreenTree Inn San Diego Mission Bay
2.5 star property
Pacific Beach, 3 km from Mission Bay
8.0 out of 10, Very good, (1,918 reviews)
"The staff was very nice and great location"
United States
Curtis
The price is NZ$168
includes taxes & fees
4 Feb - 5 Feb
GreenTree Inn San Diego Mission Bay

Hampton Inn Cardiff Beach Encinitas, CA

Hampton Inn Cardiff Beach Encinitas, CA
3.0 star property
28.3 km from Mission Bay
9.2 out of 10, Wonderful, (1,036 reviews)
"Room was nice and clean, also the beds were really comfortable. "
United States
Victor
The price is NZ$272
includes taxes & fees
1 Feb - 2 Feb
Hampton Inn Cardiff Beach Encinitas, CA

DoubleTree by Hilton San Diego - Del Mar

DoubleTree by Hilton San Diego - Del Mar
4.0 star property
Carmel Valley, 17.8 km from Mission Bay
8.4 out of 10, Very good, (2,014 reviews)
"Nice hotel, staff is great."
United States
Felipe Ramirez
The price is NZ$244
includes taxes & fees
8 Feb - 9 Feb
DoubleTree by Hilton San Diego - Del Mar

Hilton Garden Inn San Diego Old Town/SeaWorld Area

Hilton Garden Inn San Diego Old Town/SeaWorld Area
3.0 star property
Old Town San Diego, 3.1 km from Mission Bay
8.6 out of 10, Excellent, (1,328 reviews)
"Great location, great price, nice hotel "
United States
Estela
The price is NZ$291
includes taxes & fees
1 Mar - 2 Mar
Hilton Garden Inn San Diego Old Town/SeaWorld Area

Loews Coronado Bay Resort

Loews Coronado Bay Resort
4.0 star property
18.1 km from Mission Bay
8.8 out of 10, Excellent, (1,073 reviews)
"Clean room, gorgeous grounds, very friendly staff "
United States
Taryn
The price is NZ$429
includes taxes & fees
8 Feb - 9 Feb
Loews Coronado Bay Resort

Comfort Inn San Diego Old Town

Comfort Inn San Diego Old Town
2.5 star property
Old Town San Diego, 4 km from Mission Bay
8.2 out of 10, Very good, (1,950 reviews)
"Rooms are very clean, workers were very friendly. Will definitely stay there again "
United States
Claudia
The price is NZ$194
includes taxes & fees
16 Feb - 17 Feb
Comfort Inn San Diego Old Town

Holiday Inn Express Mira Mesa-San Diego by IHG

Holiday Inn Express Mira Mesa-San Diego by IHG
2.5 star property
18.7 km from Mission Bay
8.4 out of 10, Very good, (1,002 reviews)
"Great place to stay for a night. The bedroom was clean and comfy and the staff were courteous. The free breakfast was also great. "
United States
Alejandro
The price is NZ$193
includes taxes & fees
8 Feb - 9 Feb
Holiday Inn Express Mira Mesa-San Diego by IHG
Lowest nightly price found within the past 24 hours based on a 1 night stay for 2 adults. Prices and availability subject to change. Additional terms may apply.

Our guide on where to stay in Mission Bay

Find the best Mission Bay areas for the activities you enjoy most.

Downtown San Diego

Known for its fantastic nightlife, fascinating museums and beautiful waterfront views, there's plenty to explore in Downtown San Diego. Top attractions like Petco Park and Port of San Diego are major draws. Catch the metro at Civic Center Station or Civic Center Station to see more of the city.

Mission Beach

If you're spending some time in Mission Beach, Mission Bay and Mission Beach are top sights worth seeing.

Pacific Beach

Relax in beachside cafés in the morning, surf clean breaks in the afternoon and dance with a youthful club crowd at night at this coastal San Diego strip.

Gaslamp Quarter

The historic heart of San Diego has a fascinating history, and today is a thriving hub for food, retail and entertainment.

Ocean Beach

Ocean Beach is beloved for its stunning beaches. Take some time to explore sights in the area like Dog Beach and Ocean Beach Farmers Market.

Top Mission Bay Hotel Reviews

Frequently asked questions

What is Mission Bay like?
You'll be sure to have fun exploring San Diego's Mission Bay neighbourhood. Looking for sights you might find in a travel guide about Mission Bay? Consider a visit to Mission Bay while you're in the neighbourhood.
What's a favourite hotel to stay in Mission Bay?
Based on Expedia customer reviews, Paradise Point Resort & Spa is the highest ranked property in Mission Bay. This resort offers a marina and 5 outdoor pools. Other favourite options in the area include The Dana on Mission Bay and San Diego Mission Bay Resort.
How many hotels should I expect to find in the Mission Bay area?
If you're searching for places to stay in San Diego, Expedia has something to meet your needs with 46 Mission Bay hotels and other accommodation options to choose from.
If I need to cancel my hotel reservation in Mission Bay, will I receive a refund?
Yes, you'll find most room reservations are refundable provided that you cancel before the accommodation's cancellation deadline, which is usually within 24-48 hours of the scheduled arrival. If you booked a non-refundable reservation, you might be able to still cancel and be given a refund within a 24-hour period of your booking. Add your dates and click on "Search", then you can use the "fully refundable" filter to view top deals in Mission Bay.
What is there to do around this San Diego neighbourhood?
Enjoy a stroll along the shore at Mission and Pacific Beaches, Ski Beach and Crown Point Shores while you're in Mission Bay. You could also plan a visit to Mission Bay or Mission Bay Golf Course while you're in the neighbourhood. Mission Beach, North Cove Beach and Bahia Point Beach are just a few of the places to visit in and around Mission Bay. When you're sightseeing in San Diego, Bay City Brewing Co. and Sail Bay are also worth a stop.