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Top Hotels Near Boot Key Harbor in Marathon from NZ$262

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Our top choices for Boot Key Harbor hotels

42-inch Smart TV with digital channels, Netflix, Hulu
Yacht Haven Marina

Yacht Haven Marina

Yacht Haven Marina
3.5 star property
2.2 km from Boot Key Harbor
9.8 out of 10, Exceptional, (241)
"Friendly staff and extremely clean."
United States
Travis
Yacht Haven Marina
Property grounds
Isla Bella Beach Resort & Spa

Isla Bella Beach Resort & Spa

Isla Bella Beach Resort & Spa
5.0 star property
2.4 km from Boot Key Harbor
9.2 out of 10, Wonderful, (1066)
"Beautiful property, staff are very friendly "
United States
Leann
The price is NZ$708
includes taxes & fees
4 Jan - 5 Jan 2026
Isla Bella Beach Resort & Spa
View from property
Captain Pips Marina & Hideaway

Captain Pips Marina & Hideaway

Captain Pips Marina & Hideaway
3.0 star property
1.2 km from Boot Key Harbor
9.0 out of 10, Wonderful, (1003)
"Staff was great, room was super clean AND location was perfect. "
United States
Grace
The price is NZ$283
includes taxes & fees
5 Jan - 6 Jan 2026
Captain Pips Marina & Hideaway
2 outdoor pools, free pool cabanas, pool umbrellas
Courtyard by Marriott Faro Blanco Resort, Marathon Florida Keys

Courtyard by Marriott Faro Blanco Resort, Marathon Florida Keys

Courtyard by Marriott Faro Blanco Resort, Marathon Florida Keys
3.0 star property
0.8 km from Boot Key Harbor
9.0 out of 10, Wonderful, (1000)
"Food great. Grounds kept prestine"
United States
Donald
The price is NZ$543
includes taxes & fees
5 Jan - 6 Jan 2026
Courtyard by Marriott Faro Blanco Resort, Marathon Florida Keys
Premium bedding, soundproofing, iron/ironing board, free WiFi
Knight's Key Suites

Knight's Key Suites

Knight's Key Suites
3.0 star property
2.7 km from Boot Key Harbor
9.0 out of 10, Wonderful, (1157)
"Very good location.. Clean room."
United States
Leonor
The price is NZ$280
includes taxes & fees
15 Jan - 16 Jan 2026
Knight's Key Suites
3 outdoor pools, pool loungers
Tranquility Bay Beachfront Hotel and Resort

Tranquility Bay Beachfront Hotel and Resort

Tranquility Bay Beachfront Hotel and Resort
4.0 star property
0.7 km from Boot Key Harbor
8.8 out of 10, Excellent, (1000)
"Great resort with lots of fun things to do. Really enjoyed our stay there. Would highly recommend it."
United Kingdom
Jaskaran
The price is NZ$733
includes taxes & fees
13 Jan - 14 Jan 2026
Tranquility Bay Beachfront Hotel and Resort
4 outdoor pools, pool umbrellas, pool loungers
Faro Blanco Resort & Yacht Club Marathon, Curio by Hilton

Faro Blanco Resort & Yacht Club Marathon, Curio by Hilton

Faro Blanco Resort & Yacht Club Marathon, Curio by Hilton
4.0 star property
1 km from Boot Key Harbor
8.8 out of 10, Excellent, (1269)
"Very nice resort. All the staff was friendly and helpful. The pool bar was great and the bartender was friendly. Our favorite place to stay in Marathon."
United States
William
The price is NZ$615
includes taxes & fees
5 Jan - 6 Jan 2026
Faro Blanco Resort & Yacht Club Marathon, Curio by Hilton
Exterior
Tropical Cottages

Tropical Cottages

Tropical Cottages
3.0 star property
2.9 km from Boot Key Harbor
8.6 out of 10, Excellent, (911)
"Decent stay, easy check in and contactless checkout. Very quiet and nice place! "
United States
Swastik
The price is NZ$262
includes taxes & fees
8 Jan - 9 Jan 2026
Tropical Cottages
Marina
Skipjack Resort & Marina

Skipjack Resort & Marina

Skipjack Resort & Marina
3.0 star property
1.7 km from Boot Key Harbor
8.6 out of 10, Excellent, (1218)
"Beautiful location clean rooms friendly staff "
United States
Tiffany
Skipjack Resort & Marina
Ocean views, open selected days
Banana Bay Resort & Marina

Banana Bay Resort & Marina

Banana Bay Resort & Marina
3.0 star property
1.6 km from Boot Key Harbor
7.8 out of 10, Good, (1001)
"Clean room, smells good, renewed, excellent bed and pillows , quiet, close to ocean and great peaceful views "
United States
Elba
The price is NZ$324
includes taxes & fees
8 Jan - 9 Jan 2026
Banana Bay Resort & Marina
BBQ/picnic Area
Aqua Lodge Rentals At Coconut Cay

Aqua Lodge Rentals At Coconut Cay

Aqua Lodge Rentals At Coconut Cay
3.5 star property
3.9 km from Boot Key Harbor
9.6 out of 10, Exceptional, (199)
"A unique and interesting place to vacation. Relaxing yet close enough to things to do. I highly recommend the Aqua Loge rentals as a place to stay."
United States
Keith
Aqua Lodge Rentals At Coconut Cay
Aerial view
Seascape Resort & Marina

Seascape Resort & Marina

Seascape Resort & Marina
3.0 star property
4.1 km from Boot Key Harbor
9.4 out of 10, Exceptional, (549)
"Staff was incredible, super clean, great location, amenities were perfect. Thank you so much!!"
United States
Laura E
The price is NZ$404
includes taxes & fees
6 Jan - 7 Jan 2026
Seascape Resort & Marina
Exterior
Grassy Flats Resort & Beach Club

Grassy Flats Resort & Beach Club

Grassy Flats Resort & Beach Club
2.5 star property
15.6 km from Boot Key Harbor
9.4 out of 10, Exceptional, (359)
" Beautiful grounds, clean rooms.and nice staff. Great location."
United States
Steven
The price is NZ$682
includes taxes & fees
13 Jan - 14 Jan 2026
Grassy Flats Resort & Beach Club
Gazebo
Bonefish Bay Motel

Bonefish Bay Motel

Bonefish Bay Motel
2.5 star property
8.1 km from Boot Key Harbor
9.2 out of 10, Wonderful, (489)
"Very nice place. Room was clean and staff very nice."
United States
MARILA
Bonefish Bay Motel
Property amenity
Fairfield Inn & Suites by Marriott Marathon Florida Keys

Fairfield Inn & Suites by Marriott Marathon Florida Keys

Fairfield Inn & Suites by Marriott Marathon Florida Keys
2.5 star property
8.3 km from Boot Key Harbor
9.2 out of 10, Wonderful, (1050)
"Great staff, clean room, good breakfast "
United States
Kelly
The price is NZ$422
includes taxes & fees
5 Jan - 6 Jan 2026
Fairfield Inn & Suites by Marriott Marathon Florida Keys
Outdoor pool, pool umbrellas, pool loungers
Hampton Inn Marathon - Florida Keys

Hampton Inn Marathon - Florida Keys

Hampton Inn Marathon - Florida Keys
2.5 star property
8.5 km from Boot Key Harbor
9.0 out of 10, Wonderful, (1003)
"Stay is excellent, highly recommended for families "
United States
Srikanth
The price is NZ$433
includes taxes & fees
5 Jan - 6 Jan 2026
Hampton Inn Marathon - Florida Keys
2 outdoor pools, open 8 AM to 9 PM, pool umbrellas, pool loungers
Glunz Ocean Beach Hotel & Resort

Glunz Ocean Beach Hotel & Resort

Glunz Ocean Beach Hotel & Resort
3.0 star property
8.3 km from Boot Key Harbor
9.0 out of 10, Wonderful, (1001)
"Staff was so sweet! Great place to stay "
United States
Shanna
The price is NZ$626
includes taxes & fees
21 Jan - 22 Jan 2026
Glunz Ocean Beach Hotel & Resort
Premium Room, 1 King Bed, Lanai, Lagoon View (Kitchenette) | View from room
Kingsail Resort

Kingsail Resort

Kingsail Resort
2.0 star property
3.6 km from Boot Key Harbor
8.6 out of 10, Excellent, (1033)
"Spacious room great staff helpful and location"
United States
William
The price is NZ$281
includes taxes & fees
6 Jan - 7 Jan 2026
Kingsail Resort
Kayaking
Sunshine Key RV Resort & Marina

Sunshine Key RV Resort & Marina

Sunshine Key RV Resort & Marina
2.0 star property
15.6 km from Boot Key Harbor
8.8 out of 10, Excellent, (160)
"Staff was great. Room so clean! Loved the shower. Bed comfy and the property was beautiful! "
United States
brenda
The price is NZ$587
includes taxes & fees
6 Jan - 7 Jan 2026
Sunshine Key RV Resort & Marina
Exterior
Coconut Cay Resort & Marina

Coconut Cay Resort & Marina

Coconut Cay Resort & Marina
2.0 star property
3.7 km from Boot Key Harbor
8.4 out of 10, Very good, (1000)
"Nice clean room and friendly accommodating staff."
United States
Jerri Anne
The price is NZ$407
includes taxes & fees
5 Jan - 6 Jan 2026
Coconut Cay Resort & Marina
Lowest nightly price found within the past 24 hours based on a 1 night stay for 2 adults. Prices and availability subject to change. Additional terms may apply.
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Top Boot Key Harbor Hotel Reviews

Captain Pips Marina & Hideaway

Captain Pips Marina & Hideaway

10/10 Excellent
"Wonderful."
Christopher 4-night trip
Posted 3 days ago
Captain Pips Marina & Hideaway

Hotels near other Boot Key Harbor attractions

This is Zippy. He lives at The Turtle Hospital on Marathon Key in Florida. This facility is doing great things to rehabilitate sea turtles that have been injure by boat strike or interactions with sharks or humans. More details ---> http://turtlestravel.com/hospital-turtles/
Photo by TurtlesTravel
Open Photo by TurtlesTravel

The Turtle Hospital

4.5/5 (467 reviews)
Explore the campus of The Turtle Hospital as part of your travels around Marathon. Stroll along the area's beautiful beaches or simply savour its seafood restaurants.
See properties
Miami Key Biscayne Golf tropical field

Florida Keys Country Club

4.0/5 (66 reviews)
Play a round of golf in Marathon at Florida Keys Country Club, and enjoy other activities such as running. Stroll along the area's marina or simply savour its seafood restaurants.
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Frequently asked questions

What's the area like around Boot Key Harbor?
Boot Key Harbor is located in Marathon. Travellers love the area for its beautiful beaches, top seafood restaurants and dolphin watching opportunities. If you're looking for a convenient place to stay, take a look at the 212 hotels and other accommodation options you'll find within a mile.
Where is the best place to stay near Boot Key Harbor?
Courtyard by Marriott Faro Blanco Resort, Marathon Florida Keys is one of the top choices for your stay based on our traveller data, and this hotel offers 2 outdoor pools and a full-service spa. It's located just a short 0.5 mi (0.8 km) from Boot Key Harbor. Other good options within a short distance include Banana Bay Resort & Marina and Tranquility Bay Beachfront Hotel and Resort.
How many hotels will I find close to Boot Key Harbor?
Expedia has 212 hotels and other accommodation options within a mile from Boot Key Harbor.
If I need to cancel the hotel reservation for my stay near Boot Key Harbor, will I receive a refund?
Yes! Most hotel reservations are refundable provided that you cancel before the accommodation's cancellation deadline, which in most cases is within 24 or 48 hours of your arrival date. If you have a reservation that's non-refundable, it might still be possible to cancel it and be given a refund within a 24-hour period of your booking. Add dates, click "Search", then filter by "fully refundable" to review top deals close to Boot Key Harbor.
What can I see and do near Boot Key Harbor?
Lounge by the water at Sombrero Beach and Sunset Park Beach. Attractions like Shady Palm Art Gallery and Crane Point Museum and Nature Center highlight the local culture. Explore nature at Vaca Key and Pigeon Key.