A lighthouse on a rocky coastline with the ocean in the foreground.

Boutique Hotels & Resorts in San Juan Islands from NZ$218

  • Change your mind

    Book hotels with free cancellation
  • Treat yourself

    Sign in to save 10% or more on thousands of hotels
    Sign in
  • Be picky

    Search almost a million properties worldwide

Check availability on San Juan Islands Boutique Hotels

Tonight
24 Aug - 25 Aug
Tomorrow
25 Aug - 26 Aug
This weekend
28 Aug - 30 Aug
Next weekend
4 Sept - 6 Sept
No exact matches found, but these alternatives could be just right

Recommended hotels in San Juan Islands

1. The Orca Inn

The Orca Inn
Friday Harbor
United States
Lydia
NZ$218
includes taxes & fees
1 Sept - 2 Sept
The Orca Inn

2. Earthbox Inn & Spa

Earthbox Inn & Spa
Friday Harbor
United States
Nicole
NZ$481
includes taxes & fees
7 Sept - 8 Sept
Earthbox Inn & Spa

3. Friday Harbor Suites

Friday Harbor Suites
Friday Harbor
United States
Ken
NZ$401
includes taxes & fees
20 Sept - 21 Sept
Friday Harbor Suites

4. Discovery Inn

Discovery Inn
Friday Harbor
United States
Paul
NZ$448
includes taxes & fees
14 Sept - 15 Sept
Discovery Inn

5. Bird Rock Hotel

Bird Rock Hotel
Friday Harbor
United States
Gloria
NZ$361
includes taxes & fees
26 Aug - 27 Aug
Bird Rock Hotel

6. Lopez Islander Resort

Lopez Islander Resort
Lopez Island
United States
Diane
NZ$441
includes taxes & fees
25 Aug - 26 Aug
Lopez Islander Resort

7. The Edenwild Boutique Inn

The Edenwild Boutique Inn
Lopez Island
United States
Frances
NZ$425
includes taxes & fees
26 Aug - 27 Aug
The Edenwild Boutique Inn

8. Friday Harbor House

Friday Harbor House
Friday Harbor
United States
Robert
NZ$848
includes taxes & fees
20 Sept - 21 Sept
Friday Harbor House

9. Outlook Inn

Outlook Inn
Eastsound
United States
Amado
NZ$700
includes taxes & fees
22 Sept - 23 Sept
Outlook Inn

10. Deer Harbor Inn

Deer Harbor Inn
Deer Harbor
United States
Nemo
NZ$419
includes taxes & fees
16 Sept - 17 Sept
Deer Harbor Inn
View all properties

Top San Juan Islands Hotel Reviews

Bird Rock Hotel

Bird Rock Hotel

10/10 Excellent
"Very cute old hotel 2 blocks from ferry. No AC in our room but we didn’t need it with open windows and ceiling fan! Having no staff there wasn’t a problem and they have dishes and a microwave in the lobby for making oatmeal or heating up leftovers. They set out lemonade and cookies in the afternoon. The only thing that I would suggest thats missing to have in the lobby would be a water cooler/filter refillable station. PARKING: We parked for the day up about 2 blocks in the 10 hr lot, then around 4 or 5, we’d bring it back down to street parking in the evening and in the am, take the car back to the free 10 hr lot not far away."
Steven 3-night trip
Posted 12 days ago
Bird Rock Hotel
The Edenwild Boutique Inn

The Edenwild Boutique Inn

8/10 Good
"Lovely place to stay and great location. Large, bright room and friendly owner. Note, 'tho, that there is no AC. It got pretty warm in our upstairs room."
ERIC 2-night trip
Posted 2 weeks ago
The Edenwild Boutique Inn

Explore a world of travel with Expedia