Mission Beach Hotels, San Diego

Start date: Check-in selected.
To Date
End date: Check-out
  • Change your mind

    Book hotels with free cancellation
  • Treat yourself

    Sign in to save 10% or more on thousands of hotels
  • Be picky

    Search almost a million properties worldwide

Check prices for these dates

Filter by

Guest rating
Guest rating
Star rating

Our top choices for Mission Beach hotels

The Wayfarer San Diego

The Wayfarer San Diego
4.0 star property
Mission Beach
9.4 out of 10, Exceptional, (1710)
"Great location great staff great stay. Would stay again "
United States
Regina
The price is NZ$371
includes taxes & fees
22 Dec - 23 Dec
The Wayfarer San Diego

Catamaran Resort and Spa

Catamaran Resort and Spa
4.0 star property
Mission Beach
8.6 out of 10, Excellent, (1109)
"Great place to vacation. "
United States
Manuel
The price is NZ$377
includes taxes & fees
14 Jan - 15 Jan 2026
Catamaran Resort and Spa

Boardwalk Hotel: Bikes, Boards & Beach Gear Included

Boardwalk Hotel: Bikes, Boards & Beach Gear Included
3.0 star property
Mission Beach
9.4 out of 10, Exceptional, (265)
"The hotel is in a great location, between the bay and ocean. We especially enjoyed the access to the bikes and beach chairs! "
United States
Laura
The price is NZ$238
includes taxes & fees
17 Dec - 18 Dec
Boardwalk Hotel: Bikes, Boards & Beach Gear Included

ITH Mission Beach Backpacker Hostel

ITH Mission Beach Backpacker Hostel
2.0 star property
Mission Beach
9.4 out of 10, Exceptional, (201)
"great location and free parking available across the street. "
United States
Saquib
ITH Mission Beach Backpacker Hostel

The DEXTRO Little Italy, BW Premier Collection

The DEXTRO Little Italy, BW Premier Collection
3.0 star property
10.7 km from Mission Beach
8.8 out of 10, Excellent, (741)
"Friendly staff and clean rooms. "
Canada
Justine
The price is NZ$215
includes taxes & fees
22 Dec - 23 Dec
The DEXTRO Little Italy, BW Premier Collection

Staypineapple, Hotel Z, Gaslamp San Diego

Staypineapple, Hotel Z, Gaslamp San Diego
3.0 star property
Gaslamp Quarter, 11.8 km from Mission Beach
9.4 out of 10, Exceptional, (1003)
"Great location "
United States
Mohammad
The price is NZ$205
includes taxes & fees
5 Jan - 6 Jan 2026
Staypineapple, Hotel Z, Gaslamp San Diego

Hilton San Diego Bayfront

Hilton San Diego Bayfront
4.0 star property
Marina District, 12.3 km from Mission Beach
8.6 out of 10, Excellent, (1868)
"Enjoyed my stay"
United States
Brandon
The price is NZ$295
includes taxes & fees
4 Jan - 5 Jan 2026
Hilton San Diego Bayfront

Marriott Marquis San Diego Marina

Marriott Marquis San Diego Marina
4.0 star property
Marina District, 11.5 km from Mission Beach
9.2 out of 10, Wonderful, (1950)
"Great hotel"
United States
Farzana
The price is NZ$409
includes taxes & fees
22 Dec - 23 Dec
Marriott Marquis San Diego Marina

The Atwood Hotel San Diego - SeaWorld/Zoo

The Atwood Hotel San Diego - SeaWorld/Zoo
3.0 star property
7.8 km from Mission Beach
8.0 out of 10, Very good, (1830)
"Clean and helpful staff, thank you !"
United States
Bora
The Atwood Hotel San Diego - SeaWorld/Zoo

San Diego Mission Bay Resort

San Diego Mission Bay Resort
4.0 star property
Mission Bay, 4 km from Mission Beach
8.4 out of 10, Very good, (1311)
"Room was super clean and updated, location up against the bay was perfect. We really enjoyed our stay and want to come back soon!"
United States
Haley
The price is NZ$312
includes taxes & fees
17 Dec - 18 Dec
San Diego Mission Bay Resort

Sheraton San Diego Resort

Sheraton San Diego Resort
4.0 star property
8 km from Mission Beach
8.4 out of 10, Very good, (3159)
"Great stay! "
United States
Melissa
The price is NZ$311
includes taxes & fees
17 Dec - 18 Dec
Sheraton San Diego Resort

Kings Inn San Diego

Kings Inn San Diego
2.5 star property
7.7 km from Mission Beach
8.8 out of 10, Excellent, (3578)
"Room was very clean, and the breakfast was good"
United States
Roxana
The price is NZ$148
includes taxes & fees
17 Dec - 18 Dec
Kings Inn San Diego

DoubleTree by Hilton San Diego - Del Mar

DoubleTree by Hilton San Diego - Del Mar
4.0 star property
Carmel Valley, 17.1 km from Mission Beach
8.4 out of 10, Very good, (1892)
"Excellent location"
United States
Paolo
The price is NZ$198
includes taxes & fees
4 Jan - 5 Jan 2026
DoubleTree by Hilton San Diego - Del Mar

Wyndham San Diego Bayside

Wyndham San Diego Bayside
4.0 star property
10.3 km from Mission Beach
8.4 out of 10, Very good, (6029)
"Always an amazing stay"
United States
Jana
The price is NZ$321
includes taxes & fees
18 Dec - 19 Dec
Wyndham San Diego Bayside

Manchester Grand Hyatt San Diego

Manchester Grand Hyatt San Diego
4.0 star property
Marina District, 11.3 km from Mission Beach
9.0 out of 10, Wonderful, (2874)
"Great Location....tons of walking from the hotel Front desk were very nice and polite will be coming back for sure "
United States
Carlos
The price is NZ$447
includes taxes & fees
17 Dec - 18 Dec
Manchester Grand Hyatt San Diego

Comfort Inn San Diego Old Town

Comfort Inn San Diego Old Town
2.5 star property
Old Town San Diego, 6.6 km from Mission Beach
8.2 out of 10, Very good, (1915)
"Efficient check in, clean rooms and great breakfast."
Canada
Wendy
The price is NZ$160
includes taxes & fees
4 Jan - 5 Jan 2026
Comfort Inn San Diego Old Town

Wyndham Garden San Diego Near SeaWorld

Wyndham Garden San Diego Near SeaWorld
3.0 star property
4.7 km from Mission Beach
7.4 out of 10, Good, (4116)
"Room was very clean and staff very pleasant "
Canada
Brian
The price is NZ$168
includes taxes & fees
22 Dec - 23 Dec
Wyndham Garden San Diego Near SeaWorld

Hotel Palmeras Chula Vista

Hotel Palmeras Chula Vista
2.0 star property
21.8 km from Mission Beach
7.2 out of 10, Good, (1997)
"Great stay"
United States
Eleazar
The price is NZ$122
includes taxes & fees
17 Dec - 18 Dec
Hotel Palmeras Chula Vista

Hampton Inn San Diego-Downtown

Hampton Inn San Diego-Downtown
2.5 star property
10.2 km from Mission Beach
8.2 out of 10, Very good, (2286)
"The room was great, the bed was comfortable."
United States
PAM
The price is NZ$208
includes taxes & fees
4 Jan - 5 Jan 2026
Hampton Inn San Diego-Downtown

The Westin San Diego Bayview

The Westin San Diego Bayview
4.0 star property
10.9 km from Mission Beach
8.6 out of 10, Excellent, (1065)
"I loved the hotel rooms bar area jacuzzi area everything was great it was in a pretty location will definitely come back "
United States
Alliyah
The price is NZ$321
includes taxes & fees
22 Dec - 23 Dec
The Westin San Diego Bayview
Lowest nightly price found within the past 24 hours based on a 1 night stay for 2 adults. Prices and availability subject to change. Additional terms may apply.

Our guide on where to stay in Mission Beach

Find the best Mission Beach areas for the activities you enjoy most.

Downtown San Diego

Known for its fantastic nightlife, fascinating museums and beautiful waterfront views, there's plenty to explore in Downtown San Diego. Top attractions like Petco Park and Port of San Diego are major draws. Catch the metro at Civic Center Station or Civic Center Station to see more of the city.

Gaslamp Quarter

The historic heart of San Diego has a fascinating history, and today is a thriving hub for food, retail and entertainment.

Pacific Beach

Relax in beachside cafés in the morning, surf clean breaks in the afternoon and dance with a youthful club crowd at night at this coastal San Diego strip.

Ocean Beach

Ocean Beach is beloved for its stunning beaches. Take some time to explore sights in the area like Ocean Beach Pier and Dog Beach.

Point Loma

Seaside views a bustling port and top sights from Shelter Island to Sunset Cliffs Natural Park – discover Point Loma, a destination also famous for its island views.

Top Mission Beach Hotel Reviews

Explore a world of travel with Expedia

Frequently asked questions

What is Mission Beach like?
Travellers to San Diego's Mission Beach neighbourhood will be sure to enjoy a stay here. Experience the best of Mission Beach with a visit to Mission Beach and Mission Bay during your trip.
Where is the best hotel for a stay in Mission Beach?
Based on Expedia customer reviews, Boardwalk Hotel: Bikes, Boards & Beach Gear Included is the highest ranked property in Mission Beach. This hotel is a short 3-minute walk from Mission Beach, and it offers in-room kitchenettes and a beach bar. Other top choices in the neighbourhood include ITH Mission Beach Backpacker Hostel and The Wayfarer San Diego.
How many hotels are there in Mission Beach?
If you're searching for places to stay in San Diego, Expedia has something to meet your needs with 1279 Mission Beach hotels and other accommodation options to choose from.
If I need to cancel my hotel reservation in Mission Beach, will I receive a refund?
Yes! You'll find that most room reservations are fully refundable if cancelled prior to the accommodation's cancellation deadline, which is often 24 or 48 hours before check in. If you have a non-refundable reservation, you might be able to still cancel and get a refund within 24 hours of your booking. Enter your dates, click on "Search", then use the filter option "fully refundable" to review top deals in Mission Beach.
What are the top things to see and do in Mission Beach?
Enjoy a stroll along the shore at Mission Beach, Mission and Pacific Beaches and Riviera Shores Beach while you're in Mission Beach. You could also plan a visit to Mission Bay or Belmont Park while you're in the neighbourhood. Sail Bay, The Promenade at Pacific Beach and Golf Gardens Miniature Golf are just a few of the places to visit in and around Mission Beach. While you're out sightseeing, Bahia Point Beach and North Cove Beach are a couple of additional sights to visit in San Diego.