Cheap Hotels & Resorts in Isahaya from NZ$56

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Check prices for these dates

Tonight
7 Nov - 8 Nov
Tomorrow
8 Nov - 9 Nov
Next weekend
13 Nov - 15 Nov
In two weeks
20 Nov - 22 Nov

Our top choices for Isahaya cheap hotels

A hotel room with a bed, a desk with a computer, a television, and a microwave.

1. HOTEL R9 The Yard Omura

HOTEL R9 The Yard Omura
2.0 star property
Omura
8.8 out of 10, Excellent, (40 reviews)
"👍 Parking lot in front of hotel room"
Hong Kong SAR China
Tsz Kin
The price is NZ$84
8 Nov - 9 Nov
HOTEL R9 The Yard Omura
A long, polished wooden hallway with doors on both sides, recessed lighting, and a framed picture on the right wall.

2. villageBFH - Hostel

villageBFH - Hostel
1.0 star property
Omura
8.4 out of 10, Very good, (172 reviews)
"very clean and very friendly staff. would love to come back, great price"
Japan
Lewis
The price is NZ$56
8 Nov - 9 Nov
villageBFH - Hostel
A modern living room with a flat-screen TV, a brown leather sofa, and a wooden accent wall.

3. Grand Base Urakami

Grand Base Urakami
3.0 star property
Nagasaki
8.8 out of 10, Excellent, (75 reviews)
"The room is huge we felt very comfortable there very clean beautiful bathroom Beautiful shower all of that the only thing I would suggest is that they have a few little condiments like maybe salt pepper that sort of thing that's the only suggestion I would give. Really a beautiful beautiful large room almost like a small apartment we were very comfortable there beautiful. Very strategically located next to also the subway"
United States
JOHN
The price is NZ$113
1 Dec - 2 Dec
Grand Base Urakami
A traditional Japanese room with tatami flooring, a low table, blue chairs, and a view of the sea.

4. Nagasaki House Burabura - Hostel

Nagasaki House Burabura - Hostel
2.0 star property
Nagasaki
8.4 out of 10, Very good, (79 reviews)
"Fantastic view"
Sweden
mikael
The price is NZ$100
8 Nov - 9 Nov
Nagasaki House Burabura - Hostel
A traditional Japanese room with tatami flooring, a futon bed, a wooden chair, and a sliding shoji screen.

5. Chatamago

Chatamago
2.0 star property
Nagasaki
7.8 out of 10, Good, (7 reviews)
"古いが清潔"
Japan
manabu
The price is NZ$77
8 Nov - 9 Nov
Chatamago
A modern bedroom with a large bed, a desk, and a chair.

6. Hostel Casa Noda

Hostel Casa Noda
2.0 star property
Nagasaki
8.2 out of 10, Very good, (363 reviews)
"Great room and convenient area. Close to the station."
United States
Collin
The price is NZ$81
7 Dec - 8 Dec
Hostel Casa Noda
A hallway with a wooden table and chairs, a door with a sign, and a white shelving unit.

7. Route - Hostel

Route - Hostel
2.0 star property
Nagasaki
9.0 out of 10, Wonderful, (83 reviews)
"One of my favorite hostels Ive stayed in Japan! You stay right above their cafe, which is very close to Nagasaki Station."
United States
STEPHEN
The price is NZ$81
10 Nov - 11 Nov
Route - Hostel
A modern, minimalist room with a dining area, a bed, and a staircase.

8. Casa Blanca Guesthouse - Hostel

Casa Blanca Guesthouse - Hostel
2.0 star property
Nagasaki Chinatown
8.2 out of 10, Very good, (247 reviews)
"Staff was amazing, rooms were comfy, breakfast option is good, 7/11 right across the street, overall loved it and would stay again"
United States
Fernanda
The price is NZ$84
8 Dec - 9 Dec
Casa Blanca Guesthouse - Hostel
A modern building facade with a glass entrance and a metal staircase.

9. GRAND BASE PEACE PARK

GRAND BASE PEACE PARK
3.0 star property
Nagasaki-shi
7.0 out of 10, Good, (2 reviews)
"Nice location clean spacious nice shower kitchen checking in was little difficult for me . They never communicated with me about the password for entry the password was five digits . They sent me four . Putting the information into their I pad didnot go smooth either . Expedia communicated with me more than the property . Talking to them language was an issue and cut me off twice ."
United States
RAMA
The price is NZ$134
8 Nov - 9 Nov
GRAND BASE PEACE PARK
A hotel room with two single beds, a desk, a chair, a mirror, and a ceiling light fixture.

10. Hotel 21

Hotel 21
2.0 star property
Nagasaki
5.0 out of 10, (18 reviews)
"Great boutique hotel which is very convenient. Walking distance to train station. Staff was very polite and friendly. Room was spacious enough and very clean. Strongly recommended! "
United States
Jun
The price is NZ$80
9 Nov - 10 Nov
Hotel 21
Lowest nightly price found within the past 24 hours based on a 1 night stay for 2 adults. Prices and availability subject to change. Additional terms may apply.
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Top Isahaya Hotel Reviews

A modern living room with a flat-screen TV, a brown leather sofa, and a wooden accent wall.
Grand Base Urakami

Grand Base Urakami

Grand Base Urakami
Nagasaki

10/10 Excellent

Excellent location for visiting tourist spots, excellent size with fantastic amenities. Check in process was relatively easy (unmanned building) and we had no issues at all. Very comfortable, felt like a home.
Australia
David
Reviewed June 4, 2025
Grand Base Urakami

Frequently Asked Questions

What is Isahaya like for travellers on a budget?

Discover low-cost places to stay in Isahaya on Expedia.com and plan a getaway that fits your budget. You can browse a variety of hotels and other accommodation options with Member Prices to score the best deal for you and earn rewards. Guided by our site's convenient page filters, you can search by your price range, or by top amenities like free breakfast and a swimming pool. Or, try refining your search with the location filters to see affordable options around local attractions, such as Isahaya Park or Konagai Culture Hall. While you browse, use the heart button to save your favourites so that you can come back to them when you're ready to book. Interested in a car or a flight too? Take your pick of the holiday packages available under Bundle and Save and discover huge discounts when you reserve your transport at the same time.

When is the best time for a budget trip to Isahaya?

Weather is probably a major factor when you plan your trip to Isahaya, but bear in mind that cheaper options are usually available when the weather isn't as good. The hottest months are usually August and July, with an average temperature of 25°C, while the coldest months are January and February, with an average of 9°C. The rainiest months in Isahaya are June, July, August and May, with each month seeing an average of 382 mm of rainfall.

What is there to see and do in Isahaya?

You won't need to spend a fortune to get to know Isahaya. You can budget for the local attractions that interest you most, and then fill your itinerary with sights that are easy on the wallet. Check out the local culture at Nagasaki Museum of History and Culture and Twenty-Six Martyrs Museum and Monument, or visit other spots like Nagasaki Prefectural Art Museum.

How can I get to Isahaya and get around on a budget?

Scoping out the transportation options in Isahaya is a smart way to keep your trip affordable. The closest airport is 9.8 mi (15.8 km) from the centre in Nagasaki (NGS). However, if that doesn't suit your budget, you can look into flights to Saga (HSG-Ariake Saga), which is 25 mi (40.3 km) away. Isahaya may not have many public transport choices so renting a car could be an economical alternative to see more of the area.