Search Clayton hotels

  • Change your mind

    Book hotels with free cancellation
  • Treat yourself

    Sign in to save 10% or more on thousands of hotels
  • Be picky

    Search almost a million properties worldwide

Check prices for these dates

This weekend
Next weekend

Filter by

Guest rating
Guest rating
Star rating

Our top choices for Clayton hotels

The Clipper Inn

The Clipper Inn
3.0 star property
Clayton
8.4 out of 10, Very good, (277 reviews)
"Very clean room, comfortable stay!"
United States
Thomas
The price is NZ$170
includes taxes & fees
12 Apr - 13 Apr
The Clipper Inn

1000 Islands Harbor Hotel

1000 Islands Harbor Hotel
3.5 star property
Clayton
9.2 out of 10, Wonderful, (1,005 reviews)
"The room and entire hotel were clean, comfortable, and beautiful. The staff was very friendly. "
United States
Michael
The price is NZ$210
includes taxes & fees
26 Apr - 27 Apr
1000 Islands Harbor Hotel

Chateau Country Inn

Chateau Country Inn
2.0 star property
Clayton
9.6 out of 10, Exceptional, (145 reviews)
"The place is super charming, everything was clean and organized, they cleared the snow in the parking lot so there were no issues, it was a fantastic stay."
United States
Gabriela
The price is NZ$194
includes taxes & fees
11 Apr - 12 Apr
Chateau Country Inn

West Winds Motel & Cottages

West Winds Motel & Cottages
2.5 star property
Clayton
9.2 out of 10, Wonderful, (164 reviews)
"Easy check in Beautiful location right on the River. "
Canada
Nancy
The price is NZ$187
includes taxes & fees
2 May - 3 May
West Winds Motel & Cottages

Capt. Thomson's Resort

Capt. Thomson's Resort
3.0 star property
Alexandria Bay Downtown
9.4 out of 10, Exceptional, (1,000 reviews)
"Awesome hotel and location!"
United States
John
The price is NZ$176
includes taxes & fees
25 Apr - 26 Apr
Capt. Thomson's Resort

Nest Inn

Nest Inn
2.0 star property
Watertown
7.8 out of 10, Good, (69 reviews)
"Excellent stay, host is courteous, helpful, and very timely in response to any issues you may have with the room. The building isn’t perfect, but the owner is working hard to make it a safe, clean, and comfortable stay for all of his guests. Definitely will stay again."
United States
Benjamin
The price is NZ$87
includes taxes & fees
8 May - 9 May
Nest Inn

Riveredge Resort

Riveredge Resort
3.5 star property
Alexandria Bay Downtown
8.4 out of 10, Very good, (1,001 reviews)
"The room was clean and the staff great."
United States
April
The price is NZ$207
includes taxes & fees
16 Apr - 17 Apr
Riveredge Resort

Allen's Budget Motel

Allen's Budget Motel
2.5 star property
Watertown
8.8 out of 10, Excellent, (247 reviews)
"Stay was very comfortable and the staff was excellent "
United States
Randall
The price is NZ$111
includes taxes & fees
9 Apr - 10 Apr
Allen's Budget Motel

Bonnie Castle Resort & Marina

Bonnie Castle Resort & Marina
3.0 star property
Alexandria Bay Downtown
7.0 out of 10, Good, (1,001 reviews)
"Staff are always friendly and helpful. Rooms are always clean and supplied with all essentials . "
Canada
Craig
The price is NZ$177
includes taxes & fees
15 Apr - 16 Apr
Bonnie Castle Resort & Marina

The GillHouse

The GillHouse
2.0 star property
Henderson Harbor
9.2 out of 10, Wonderful, (5 reviews)
"Clean room "
United States
Byron
The price is NZ$246
includes taxes & fees
1 May - 2 May
The GillHouse

Ramada by Wyndham Watertown/Thousand Islands NY

Ramada by Wyndham Watertown/Thousand Islands NY
2.5 star property
Watertown
8.0 out of 10, Very good, (1,027 reviews)
"The room was very large, the location has easy access to everything you need, restaurants and interstate. Didn't have much interaction with staff because I didn't need anything (check in was fast and easy) did have a great breakfast for the price. It's an older hotel so don't expect fancy, till you go for breakfast, the dinning room is fabulous."
United States
Bart
The price is NZ$151
includes taxes & fees
27 Apr - 28 Apr
Ramada by Wyndham Watertown/Thousand Islands NY

Comfort Inn & Suites Watertown - 1000 Islands

Comfort Inn & Suites Watertown - 1000 Islands
2.5 star property
Watertown
8.4 out of 10, Very good, (1,020 reviews)
"The hotel was perfect for the price! Staff was friendly, and the rooms were great! "
United States
Chrysta
The price is NZ$187
includes taxes & fees
3 May - 4 May
Comfort Inn & Suites Watertown - 1000 Islands

Quality Inn & Suites Watertown Fort Drum

Quality Inn & Suites Watertown Fort Drum
2.5 star property
Calcium
8.2 out of 10, Very good, (1,001 reviews)
"Very bright and well lit parking area, always super clean throughout,."
Canada
Alan
The price is NZ$129
includes taxes & fees
7 May - 8 May
Quality Inn & Suites Watertown Fort Drum

Hampton Inn Watertown

Hampton Inn Watertown
2.5 star property
Watertown
9.0 out of 10, Wonderful, (1,000 reviews)
"Staff was very polite, the room was beautiful and the pool was awesome!! "
United States
Jessica
The price is NZ$223
includes taxes & fees
27 Apr - 28 Apr
Hampton Inn Watertown

The Roxy Cape Vincent

The Roxy Cape Vincent
2.5 star property
Cape Vincent
9.0 out of 10, Wonderful, (44 reviews)
"Great location for our trip. "
United States
Andrew
The price is NZ$297
includes taxes & fees
30 Apr - 1 May
The Roxy Cape Vincent

Days Inn by Wyndham Watertown Fort Drum

Days Inn by Wyndham Watertown Fort Drum
2.0 star property
Calcium
8.8 out of 10, Excellent, (1,001 reviews)
"Clean rooms and incredibly friendly staff! "
Canada
Brianna
The price is NZ$128
includes taxes & fees
7 May - 8 May
Days Inn by Wyndham Watertown Fort Drum

Royal Inn Motel

Royal Inn Motel
2.0 star property
Watertown
7.2 out of 10, Good, (416 reviews)
"Very nice stay"
United States
Kevin
The price is NZ$109
includes taxes & fees
10 Apr - 11 Apr
Royal Inn Motel

Harbor House Inn

Harbor House Inn
2.5 star property
Sackets Harbor
9.2 out of 10, Wonderful, (301 reviews)
"Great place"
United States
Peter
The price is NZ$304
includes taxes & fees
9 Apr - 10 Apr
Harbor House Inn

Fairfield Inn & Suites Watertown Thousand Islands

Fairfield Inn & Suites Watertown Thousand Islands
3.0 star property
Watertown
9.2 out of 10, Wonderful, (730 reviews)
"Very nice place. "
Canada
Jocelyn
The price is NZ$247
includes taxes & fees
10 Apr - 11 Apr
Fairfield Inn & Suites Watertown Thousand Islands

Holiday Inn Express Hotel & Suites Watertown-Thousand Island by IHG

Holiday Inn Express Hotel & Suites Watertown-Thousand Island by IHG
2.5 star property
Watertown
9.2 out of 10, Wonderful, (999 reviews)
"Everything was good. I would stay there again. "
United States
Kelly
The price is NZ$226
includes taxes & fees
29 Apr - 30 Apr
Holiday Inn Express Hotel & Suites Watertown-Thousand Island by IHG
Lowest nightly price found within the past 24 hours based on a 1 night stay for 2 adults. Prices and availability subject to change. Additional terms may apply.
Save an average of 15% on thousands of hotels when you're signed in

Stay near popular Clayton attractions

Learn more about Clayton

Nestled along the St. Lawrence River, this charming village invites you to explore its historic city centre and scenic waterfront. Cruise the Thousand Islands, visit Boldt Castle on Heart Island, or cast a line for bass in one of Clayton's many fishing spots.

Clayton, NY, USA - 02-09-2025:  Winter aerial image Clayton, NY along a frozen St Lawrence River

Top Clayton Hotel Reviews

More cheap accommodation in Clayton

Frequently asked questions

Where is the best place to stay in Clayton?
Chateau Country Inn is a favourite property for Expedia customers. This B&B is a short 14-minute walk from Lake Ontario, and it offers free breakfast and free parking. 1000 Islands Harbor Hotel is another top choice for your trip based on reviews. See all available top hotels, or vacation rentals in Clayton.
What are some of the best holiday rentals that Clayton has to offer?
Waterfront 5 Bedroom Grindstone Island Farmhouse: This highly rated holiday home rental in Clayton is located on a river, and has a patio, a garden and a BBQ to put you at ease in your new surroundings. It has 5 bedrooms, as well as a kitchen with a dishwasher, a fridge and a stovetop, so that you can cook with friends or family. Make the most of games in this rental home to help you unwind. Other favourite homes for rent in Clayton are Visit Us For The Best View Of The Thousand Islands and Located in the heart of the Thousand Islands, directly across from ClaytonNY. See all vacation rentals in Clayton.
If I need to cancel my hotel reservation in Clayton, will I receive a refund?
Yes, the majority of room reservations are fully refundable if cancelled prior to the hotel's cancellation deadline, which often is within 24-48 hours of check in. If you have a non-refundable reservation, you might still have the option to cancel and get a refund within 24 hours of booking. Filter your search by fully refundable to find flexible hotel deals in Clayton.
What's the best dog-friendly place to stay in Clayton?
The Clipper Inn is a top dog-friendly inn, and offers a restaurant along with free WiFi for its human guests. West Winds Motel & Cottages is another option for a stay with your pet. See more pet-friendly hotel accommodations in Clayton.
What's the best accommodation for a golf trip to Clayton?
The Clipper Inn is a top inn that has an adjacent golf course and features free WiFi. Another good choice is Wooden Boat Inn if you'd like to be close to a golf course while in town. You can tee off at C-Way Golf Course during your trip. See more golf hotels in Clayton.
What are some accommodation options with pools in Clayton?
1000 Islands Harbor Hotel: Features free self parking, an indoor pool and complimentary wireless Internet access. Another option that features an on-site pool is West Winds Motel & Cottages. View all hotels with pools in Clayton.
What's it like staying in Clayton?
Visitors to Clayton will definitely enjoy the riverfront. Tourists can also enjoy so much more including its coffee shops. In Clayton, there are 120 hotels and other accommodation options to choose from. Find out more about Clayton.
What is there to see in Clayton?
Cultural venues include The Clayton Opera House, Thousand Islands Museum and Antique Boat Museum. Natural beauty is on display at Lake Ontario, Grenell Island and Blind Bay. A couple of additional sights to add to your itinerary are 1000 Islands River Rat Cheese and Clayton Marina. Take a look at what more there is to see and do in Expedia's Clayton guide.
What's the seasonal weather like in Clayton?
The hottest months are usually July and August, with an average temperature of 19°C, while the coldest months are January and February, with an average of -3°C. The snowiest months in Clayton are January, February, March and November, with each month seeing an average of 47 cm of snowfall.

Explore a world of travel with Expedia