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Top hotels and accommodation in Yakushima

Cottage HANA MANA
2.5 star property
10.0 out of 10, Exceptional, (4)
"Amazing cottage set in a beautiful location with views of the surrounding mountains and forests that reminded us of Hawaii. The property features an outdoor onsen, a well equipped kitchen and is comfortably furnished throughout. Hana Mana is the perfect getaway for a couple or family visiting Yakushima."
Cottage HANA MANA
Sen-no-ie
2.5 star property
10.0 out of 10, Exceptional, (13)
"Beautiful location, lovely staff, charming accommodation - highly recommended!"
Sen-no-ie
Yakushima Shikinoyado Onoaida
2.5 star property
10.0 out of 10, Exceptional, (3)
"Had a great stay here. Dinner and breakfast was excellent. The traditional japanese tatami room was nice to experience. Kentaro went out of his way to make us feel at home. We missed a bus that only comes around every 2 hrs and Kentaro appeared out of nowhere in his Van, was like "Hurry get on!" and we chased down that bus. Good times! Thanks Ken!"
Yakushima Shikinoyado Onoaida
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Cottage Orange House Yakushima
3.0 star property
10.0 out of 10, Exceptional, (11)
"Great stay, host was great, store and coin laundry nearby. Well worth the price. "
Cottage Orange House Yakushima
Holiday House Nagata / Kumage-gun Kagoshima
10.0 out of 10, Exceptional, (1)
The price is NZ$160
includes taxes & fees
22 May - 23 May
Holiday House Nagata / Kumage-gun Kagoshima
Cottage Views
3.0 star property
10.0 out of 10, Exceptional, (3)
"Beautiful house, kept lovely and cool by the mountain breeze. Wonderful hosts, who provided everything we needed. We were really comfortable there and very sad to leave."
Cottage Views
Yakushima South Coast House
3.0 star property
10.0 out of 10, Exceptional, (2)
"前回利用してリピート利用です。他にも少し安いゲストハウスはありますが、ここを利用してしまうと部屋の広さと使いやすさがピカイチで、他の選択肢を選べなくなってしまいます。プラスポイントは部屋の広さ、掃除が徹底されている点、キッチンや冷蔵庫、お皿など自炊グッズの充実、タオル類のクオリティ等々。マイナスポイントとしては、空港や港からの距離が少し遠いことくらいです。レンタカーがあれば大きな問題にはなりませんが。ちなみに宿から車で5分で海中温泉やJRホテルの温泉がありますので、温泉に入る場合もとても便利です。あと、JRホテルへ入る道にAコープというスーパーがあるので買物もとても便利です。"
Yakushima South Coast House
sankara hotel & spa Yakushima
4.0 star property
9.8 out of 10, Exceptional, (80)
"Sankara was a perfect oasis of peace and tranquility on Yakushima Island. The service was impeccable. Everyone knew who we were and the villa we were staying at. So polite, gracious and helpful. The facilities were top notch and the spa was wonderful. We sampled the massages and facial treatments. Amazing experience. Dinner options were perfect. We were very impressed. My only complaint was the breakfast got a little repetitive and boring. We will definitely return. "
sankara hotel & spa Yakushima
samana hotel Yakushima
3.5 star property
9.6 out of 10, Exceptional, (76)
"Staff is very friendly."
The price is NZ$1,122
includes taxes & fees
15 Jun - 16 Jun
samana hotel Yakushima
Yakushima Cottage Morino Fairy
3.0 star property
9.4 out of 10, Exceptional, (45)
"We stayed in one of the bigger rooms with the outdoor bath. Only fits one at a time for adults but the deck and upper deck are beautiful. Room is overall clean, big and kitchen was great considering the island food opens late and closes early. A car is needed to access and anyone visiting Yakushima needs a rental car. I don't think it is possible to enjoy it as much without one after being there. The staff and owners are wonderful people and really treat their guests like gold. The tankan juice...
Yakushima Cottage Morino Fairy
Cottage Morinokokage
2.5 star property
9.2 out of 10, Wonderful, (62)
"The cottages are very cute and comfortable. Also the kitchen is well equipped. We made breakfast every morning. The owner of the property is very friendly, professional and helpful. He made a reservation for us at the sushi restaurant Iso no kari ,which was amazing and very authentic. Also the Slow pasta restaurant was very good. They both are 10-15 walk from the property. "
The price is NZ$178
includes taxes & fees
2 Jun - 3 Jun
Cottage Morinokokage
The Hotel Yakushima
2.5 star property
9.2 out of 10, Wonderful, (23)
"A really unique property in a lovely and convenient location, used to dealing with hikers and international guests. Great bath, good breakfast buffet, and pleasant staff who are all eager to help you have a great experience on Yakushima, no matter what you plan to do! I hope I get a chance to go back someday. "
The Hotel Yakushima
Yakushima House TABUGAWA
3.5 star property
9.2 out of 10, Wonderful, (13)
"Very spacious and well equipped. Communication was easy with owner. High recommended . "
The price is NZ$294
includes taxes & fees
11 Jun - 12 Jun
Yakushima House TABUGAWA
Yakushima Guesthouse Suginoko
2.5 star property
9.2 out of 10, Wonderful, (30)
"Located only a few mins away from the pickup point for Jomon Sugi trail bus so it saves us alot of time in the morning. Staff were very friendly and helped us to pack lunch for our hike. The room came with our own private bathroom. Saw a couple of big spiders in the room but I suppose it is inevitable given the location."
The price is NZ$111
includes taxes & fees
4 Jun - 5 Jun
Yakushima Guesthouse Suginoko
Yakushima Green Hotel
3.0 star property
9.0 out of 10, Wonderful, (115)
"INCREDIBLE ocean view, beautiful garden trail, large two bedroom with tatami space, public bath, free massage chairs. The hotel is not newer, but clean, quiet, good value for the price. Front staff are very nice and helpful."
The price is NZ$213
includes taxes & fees
2 Jun - 3 Jun
Yakushima Green Hotel
Minshuku Iwakawa
2.5 star property
9.0 out of 10, Wonderful, (94)
"Clean, friendly staff and lots of restaurants nearby! "
The price is NZ$72
includes taxes & fees
21 May - 22 May
Minshuku Iwakawa
Marine Blue Yakushima
2.5 star property
9.0 out of 10, Wonderful, (23)
"Beachfront Ryokan style. Great beach, view and hospitality. 10 stars. "
The price is NZ$404
includes taxes & fees
2 Jun - 3 Jun
Marine Blue Yakushima
Yakushima Jomon No Yado Manten
3.0 star property
8.6 out of 10, Excellent, (97)
"We stayed 4 nights, and enjoyed Onsen everyday, bento box lunch for our days trips and dinner on 3 nights. Staff were very helpful with ideas to explore the island."
The price is NZ$591
includes taxes & fees
17 May - 18 May
Yakushima Jomon No Yado Manten
Minshuku Umikawa
2.5 star property
8.6 out of 10, Excellent, (39)
"It was a great stays in Yakushima with minshuku Umikawa. Very near to the pier , bus station and supermarket! "
Minshuku Umikawa
Minshuku Takesugi
2.5 star property
8.6 out of 10, Excellent, (4)
"We used to live in Yakushima when I was a child and this time it was a visit in 15 years. So much has changed! We met our previous neighbors, my childhood friends, and great scenery. We will be back to see all our friends again and spend more time in Yakushima. We enjoyed it very much!!"
Minshuku Takesugi
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Lowest nightly price found within the past 24 hours based on a 1 night stay for 2 adults. Prices and availability subject to change. Additional terms may apply.

Frequently asked questions

If I need to cancel my hotel reservation in Yakushima, will I receive a refund?

Yes! You'll find that most hotel room reservations are fully refundable provided that you cancel before the accommodation's cancellation deadline, which often is within 24-48 hours of your arrival date. If your reservation is non-refundable, you may still be able to cancel and be given a refund within 24 hours of your booking. Filter your search by fully refundable to find flexible hotel deals in Yakushima.

What's the best hotel for a family trip to Yakushima?

Pension Sea Forest is a top 3-star pension on Expedia for families, and features free parking and laundry facilities. Other good options to stay with the children include Yakushima Umi-no Cottage TIDA and Yakushima Passionkan. Also, attractions such as Yakushima National Park and Yakusugi Nature Museum are fun for children of all ages. Find more child-friendly accommodations in Yakushima.

What's the best accommodation for a romantic getaway to Yakushima?

Cottage Morinokokage is a favourite guest house for couples, and features slippers and private balconies. See all romantic hotels in Yakushima.

What's the best high-end place to stay in Yakushima?

Sankara hotel & spa Yakushima is a 4-star hotel with 2 restaurants and a full-service spa, and it's a popular choice for Expedia travellers looking for a pampered stay. Find more luxury hotels in Yakushima.

What is staying in Yakushima like?

Visitors can enjoy all that Yakushima has to offer, including the seaside, forests and ecotours. In Yakushima, there are 54 hotels and other accommodation options to choose from. Find out more about Yakushima.

What should I see while I'm in Yakushima?

Cultural venues include Yakusugi Nature Museum and Yakushima Sea Turtle Hall. Landmarks like Jomonsugi, Wilson Stump and Yaku Shrine might be worth a visit. Natural beauty is on display at Mount Miyanoura, Yakushima National Park and Yakusugi Land. Take a look at what more there is to see and do in Expedia's Yakushima guide.

What's the seasonal weather in Yakushima?

The hottest months are usually August and July, with an average temperature of 27°C, while the coldest months are January and February, with an average of 15°C. The rainiest months in Yakushima are June, September, May and July, with each month seeing an average of 364 mm of rainfall.